Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq10576 269 3e-67 seq6779 181 1e-40 seq5234 150 2e-31 seq5172 122 1e-22 seq10590 93.3 5e-14 >seq10576 Length=3682 Score = 269 bits (298), Expect = 3e-67 Identities = 1085/1680 (65%), Gaps = 54/1680 (3%) Strand=Plus/Plus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| || |||||||| |||| ||||||||| || | ||||| || | | || Sbjct 513 GTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGAGTTT 572 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATG-AAGCGTC 115681 | || || || | ||| || ||||| | || || |||| ||||| | Sbjct 573 GCTGATAGTCGGGTCAGCGATGTGGATGTTCAGAGACTGACTCTGGCAGATGTAAGCG-C 631 Query 115682 CCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGA 115741 | || || |||| || ||| | ||| ||||| ||||| |||||||||||| |||| Sbjct 632 CACGGTCAGCCGACAGATCCAGCACGGCCTTCTGTTTGATCTCCCACACAGTTTTGTACT 691 Query 115742 GGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCA 115801 || ||| | | ||||| || || || || || | ||| ||||| | || | | Sbjct 692 TGTCCTTGACGTGGTCTGGAATGGCCTTGACCTTCTGCACAGATCCACCGTCATTTAGAA 751 Query 115802 TGAGATCCTTCATA--TCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTG 115859 | ||| | | || || || ||||| || | || | || |||| || |||| Sbjct 752 TCTGAT--TACGTACTTCTGGTGTCCAGATTCCCAGCTCAATAAGCTCCTTCATCAGGTA 809 Query 115860 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTA 115919 ||| ||||| | |||||| || || || || | || ||||||| |||||| Sbjct 810 CTTGTTGACGATCGTAAACTCGCCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTA 869 Query 115920 TGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGC 115979 ||||| | | |||||||||| |||| ||| || |||||||| || || ||||| ||||| Sbjct 870 AGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCTGTGGACGCCGTCGGCATCGGTGC 929 Query 115980 CATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGT- 116038 | || || |||||| ||||| | | | |||||||| || |||||| Sbjct 930 AACCAGCAGTGAGTTGCGAAGACCGTATTTGATTACGTCATCCTTGAGTGCCGCCCAGTT 989 Query 116039 -CGTAGTTGAGCTTT--GTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACG 116095 | ||| || | || | | | ||||||| || ||||||| || || | | Sbjct 990 CCAGAGTCCAGATGCAGGTGTGACGC-CCCACATGTCGAACTGGAAGACGCCCTTACTGG 1048 Query 116096 CTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 116155 | || || |||| || ||||| || || ||| ||| || | || | || || Sbjct 1049 CAGGGGAGCCCTGGAACGTCTCGTACGGACCCAATTCCTTGGCGATCTCCATGGACGTCT 1108 Query 116156 CGAGGGCTGCGTGATACATTGTCTCAAAAATGC-------GAGCATTCATTGCCTTGGCC 116208 | | || |||| || || ||||| || ||| |||| ||| | |||| | Sbjct 1109 CCATTGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGC--TCACTAGCTTG-CT 1165 Query 116209 TCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACC 116267 | || || ||||| | | || | || || |||| || ||||| ||||| || Sbjct 1166 TGCTC----TCGAACGC-ATAGTTCATGAGGATGAACGCATCAGCCAGACCCTGGACGCC 1220 Query 116268 GAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC-ACGGGATAAAAAT 116326 | ||||| |||||||| | ||| || ||||| ||||| ||| | || ||||| | | Sbjct 1221 AATACCAATGGGGCGATGACGCATGTTGGACTTCCGAGCC-TCTGCTACAGGATAGTAGT 1279 Query 116327 TCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTT 116386 | || || ||| | || || || |||| ||||| | ||||| || || | Sbjct 1280 TGACGTCAATGACCTTGTTGAGGTTGCGAGTGATCACCTTGACCACTTCATACAGTTTCT 1339 Query 116387 CGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGAT 116446 ||| || || || ||| || || |||| || || || | ||||||| | Sbjct 1340 GGTAGTCGAACACGCC---CTCGTCCACGA---ACTTGGGCAGCGCCACAGACGCCAAGT 1393 Query 116447 TACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGA 116504 | ||||| | |||||| |||||||| || | || || || || || Sbjct 1394 TGCACACTGCCACCTCATCGGGCGACGTGTACTCCATCACCTCGCAGCATAAGTTGCTGG 1453 Query 116505 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAG 116564 | || ||||||| ||||| || || ||||| ||| || ||||||||||| Sbjct 1454 AGCGG--ATCGTGCCCAGGTTCTGCTGGTTCGACTTGCGGTTGGCTGCGTCCTTGTAGAG 1511 Query 116565 CATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGC 116624 |||| | ||| |||||||| | || | | || || || ||| || | || | Sbjct 1512 CATAAAGGGCACTCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTG- 1568 Query 116625 TGGCAC-AGTGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAA 116680 ||| | ||| || || || || |||| |||||||||| || || || |||| Sbjct 1569 -GGCGTTAATGGTCTTCCGAGCGCGTCCTTCCTTCTCGTACTTTTCATACAGCGCTTCAA 1627 Query 116681 ACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCAT 116739 |||| || ||| |||| ||| |||| || || || | | |||||||| ||| ||| Sbjct 1628 ACTCGTCTCCC-CAGCACTCGTAGAGACCAGGAGCTTCGTTAGGACAGAATAGACTCCAC 1686 Query 116740 TGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGA 116799 | |||| |||| || | |||||||||||| || || | ||||||||| |||| | Sbjct 1687 TTACCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAGAACAAG 1746 Query 116800 TCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGAT 116858 || ||| ||| || || | | || || || |||| |||| || || | | Sbjct 1747 TCACGAGCGCGGTGCAGCT-CGTTGCCGTGGTTCTTGCGCAGATCCAGGAACTCGAACAC 1805 Query 116859 ATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTG 116915 || |||||||| || |||| || | || | || || ||||| || || |||| Sbjct 1806 GTCTGCGTGCCATGGCTCCAAATAGATAGCAAAGGATCCTTTGCGCTTACCTCCGCCCTG 1865 Query 116916 GTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTG 116975 || ||||| | ||||| ||||||| || || ||||| || || || |||| || Sbjct 1866 GTCCACATAGCGAGCCGTGTCGTTAAACACACGCAGCATGGGGATAATGCCATTGGAGGA 1925 Query 116976 GCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAAT 117035 |||||| || || || || ||| |||||| || | ||| || || ||||| Sbjct 1926 GCCATTCGTGCCGCGGATGTAGCTGTTGGTGGCTCGGATGTTGTGCATACTGATGCCAAT 1985 Query 117036 ACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGAT 117095 ||| || |||||||| || || ||||| | | |||| || ||||||| || ||||| Sbjct 1986 ACCTCCCGCCCACTTGGATATGCACGCGCATTGCTTGAGCGTGTCGTAGATGCCCTCGAT 2045 Query 117096 CGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGC 117155 ||||||| ||| |||| | ||||| || |||| || || | ||| || || || Sbjct 2046 CGAGTCATCCTGCATTGCCAATAGGAAACAAGAAGACAGCTGAGGACGTGGCGTGCCGGC 2105 Query 117156 GTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTC 117215 ||||||||| || || |||||||| |||| | ||| ||||| ||||| ||||| Sbjct 2106 GTTGAAGAGAGTAGGGGTCGCGTGCGTGAAGAACTTTTGCGACATGAGCTCGTACGTCTC 2165 >seq6779 Length=4860 Score = 181 bits (200), Expect = 1e-40 Identities = 368/532 (69%), Gaps = 22/532 (4%) Strand=Plus/Plus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || || || ||||||||||||||||||||||| || | || ||| | ||||| Sbjct 380 TACTCGCCCACACGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGTGAGATCATGTCCATC 439 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCC-CAATCTGTTTGAGGAGACG 127350 | || || |||||||| ||| | || | | ||| | || | || | || ||||| Sbjct 440 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACACACTCAGTGAGTAT-AGTAGACG 498 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT-TAC 127409 ||||| || |||||||||| | | |||| | | |||||||||||||| || | || Sbjct 499 ATCCGCCACAAACTCAATGTATTGACACATGAGCGCTGAGTTCATACCGATAAGCTCCAC 558 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | || |||| ||| | | |||| | | |||||| ||||||| || || | ||| ||| Sbjct 559 A-GGCAGCGAGTCGCACACGAACTCGTGCTCAATCACCACAGCATCGCGAATGATCTCGT 617 Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAA--AGTCTTGAAGAGTTC------CACAGC 127521 | | | | | || ||| | ||| ||| || ||| |||| | ||| || Sbjct 618 GGACACGGCTCTCC---GGTATCTTG-TTAACTAG-CTT--CGAGTACATTAAGCAC-GC 669 Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 || || ||| | ||||| ||||| ||| | || || ||||||| |||||| || Sbjct 670 GAAATCCGTGTGCATGCCCTCATCACGACTGATCATCTCGTTTGAGAAGCTCAGACCAGG 729 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 ||| ||||| |||||||| | |||||||| | ||||||||| || || |||||||| || Sbjct 730 CATAAGACCGCGCTTCTTAAGCCAGAAAACGGAACAAAATGACCCCGAAAAGAAGATACC 789 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTATCAAACC 127700 ||||| |||||||| | |||||||| || | || || || | ||| ||| Sbjct 790 TTCCACTGCAGCGAACGCTAGCAGACGCTCTGCGTACGA-CGACACACGCGGGTCACACC 848 Query 127701 ACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 | || | |||||| | ||||| |||| || |||||||| |||| ||| || Sbjct 849 ATTTTAGCGCCCAGTTGGCCTTCTTCTGGACACATGGGATAGTCTCGATAGC 900 >seq5234 Length=8456 Score = 150 bits (166), Expect = 2e-31 Identities = 395/592 (67%), Gaps = 17/592 (3%) Strand=Plus/Minus Query 127221 CCAGC-TTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||| ||| ||| || || || ||||||||||||||||| ||||| || | ||| | Sbjct 5804 CCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGAGAG 5745 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 127339 || | ||||| | || || |||||||| | || | || | | ||| |||| | Sbjct 5744 ATCATGTCCATCCAGTCGAAAGGGTTCTTGGCGTGGTAGATCTTGGACACACCAAGCGAG 5685 Query 127340 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 127399 | || ||||| || | ||| |||||||||||| |||| | |||||||| || Sbjct 5684 TACAGCAGACGGTCAGCAACGAACTCAATGTACTGGCACATGAGGCCCGAGTTCATGCCA 5625 Query 127400 ATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGT 127459 || || | || |||| ||| | |||| | | |||||| |||| || || || Sbjct 5624 ATCAGCTCCACCGGCAGCGAGTCACGCACGAACTCGTGCTCAATCACCACCGCGTCACGA 5565 Query 127460 ACGATGGCGTGAATAGTGTCCACCC-CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCAC 127518 | ||| |||| | | | || ||| | | | | || |||| |||| | Sbjct 5564 ATGATCTCGTGCACGCGGCTCTCCGGCAGCT---TAGTGACCAG-CTTG--GAGTACAGG 5511 Query 127519 AG-----CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCAC 127573 || | || || ||| | |||||||||||| |||||| || |||||||||| Sbjct 5510 AGGCAGGCGAAGTCCGTGTGCATACCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTG 5451 Query 127574 AGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAG 127633 || || |||||||| || |||||||| | |||||| || | || || || || |||||| Sbjct 5450 AGTCCAGGCATGAGGCCACGCTTCTTAAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAG 5391 Query 127634 AAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGT 127692 ||||| ||||| || || || || | ||||||||| | ||||| | || | Sbjct 5390 AAGATGCCCTCAACGGCAGCAAAAGCCAGTAGACGCTCCGGGTAGGAG-GACACACGAGG 5332 Query 127693 ATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 || ||||||| | |||||| ||||| || ||| || || || | ||||| ||||| Sbjct 5331 GTCGCACCACTTGAGCGCCCAGTGTGCTTTCTTCGTGACGCACGGAATGGTCTCAATCGC 5272 Query 127753 TTCAAAGAGTTCCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 127803 || || | | ||| || ||| | ||| ||||||||| | || ||||| Sbjct 5271 ACGCAACAGATGATCCTTCTC-GATCGCATCCTTGATGTACGTGTCAATGAG 5221 >seq5172 Length=6496 Score = 122 bits (134), Expect = 1e-22 Identities = 283/414 (68%), Gaps = 21/414 (5%) Strand=Plus/Minus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || || || ||||||||||||||||||||||| || | || ||| | ||||| Sbjct 3343 TACTCGCCCACACGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGTGAGATCATGTCCATC 3284 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCC-CAATCTGTTTGAGGAGACG 127350 | || || |||||||| ||| | || | | ||| | || | || | || ||||| Sbjct 3283 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACACACTCAGTGAGTAT-AGTAGACG 3225 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT-TAC 127409 ||||| || |||||||||| | | |||| | | |||||||||||||| || | || Sbjct 3224 ATCCGCCACAAACTCAATGTATTGACACATGAGCGCTGAGTTCATACCGATAAGCTCCAC 3165 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | || |||| ||| | | |||| | | |||||| ||||||| || || | ||| | | Sbjct 3164 A-GGCAGCGAGTCGCATACGAACTCGTGCTCAATCACCACAGCGTCGCGAATGATCTCAT 3106 Query 127470 GAATAGTGTCCAC-CCCAGGTCTATTGCGTAA--AGTCTTGAAGAGTTC------CACAG 127520 | | | | || | | ||| ||| ||| || ||| |||| | ||| | Sbjct 3105 GGACA----CGACTCTCCGGTAGCTTG-TTAACCAG-CTT-CCGAGTACATTAAGCAC-G 3054 Query 127521 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 127580 | || || ||| | ||||||||||| ||| | || || ||||||| |||||| | Sbjct 3053 CGAAATCCGTGTGCATGCCCTCGTCACGACTGATCATCTCGTTTGAGAAGCTCAGACCAG 2994 Query 127581 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGA 127634 |||| ||||| || ||||| | |||||||| | || || ||||| ||||||| Sbjct 2993 GCATAAGACCGCGTTTCTTAAGCCAGAAAACTGAGCAGAACGAGCCCGAGAAGA 2940 Score = 104 bits (114), Expect = 3e-17 Identities = 167/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || || || ||||||||||||||||||||||| || | || ||| | ||||| Sbjct 5827 TACTCGCCCACACGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGTGAGATCATGTCCATC 5886 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC-CCCAATCTGTTTGAGGAGACG 127350 | || || |||||||| ||| | || | | ||| |||| | || | || ||||| Sbjct 5887 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACACACCCAGTGAGTAT-AGTAGACG 5945 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT-TAC 127409 |||| || |||||||||||| | |||| | | |||||||||||||| || | || Sbjct 5946 GTCCGCCACAAACTCAATGTACTGACACATGAGCGCTGAGTTCATACCGATAAGCTCCAC 6005 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || |||| ||| | | |||| | | |||||| ||||||| || || | ||| Sbjct 6006 A-GGCAGCGAGTCGCATACGAACTCGTGCTCAATCACCACAGCGTCGCGAAGGAT 6059 >seq10590 Length=17674 Score = 93.3 bits (102), Expect = 5e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 176819 TTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACT 176878 || || || |||||||| |||||||| || ||||| ||||| || | || ||||| ||| Sbjct 10442 TTGCCACGCAGAGGGAAGACACCGTACTGGTCACGTCCAACGACTGCCAGTCCAGCCACT 10383 Query 176879 GCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCC 176938 || || | |||||| ||||||||||| |||| || |||| |||| | || | | Sbjct 10382 GCAAGAGCCTTCGCTGAATCACCCTCTGTCAATATAAGCGAGCACTCGCTTGAGCGAGGA 10323 Query 176939 GTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAA 176972 || ||| ||||||||| || | |||||||| Sbjct 10322 CCACCGGCCAGGTTCGCATCCTCAAGCTTGGGAA 10289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613387819167720