Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq10576 188 1e-42 >seq10576 Length=3682 Score = 188 bits (208), Expect = 1e-42 Identities = 417/611 (68%), Gaps = 17/611 (3%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTACAT 203895 |||||||||||||||||| || |||| |||| || | | | || |||||||| Sbjct 465 CTTGTCCACCGTGAACTGGATAGCGT---CGGCTTTSGGGCGTCCGCGCATGTAGTACAT 521 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||||||||| || ||||||| ||| |||| | ||||||||| | |||||||| | | Sbjct 522 GCCGGTCTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGAGTTTGCTGATAGT 581 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 ||||| || ||||| |||||||||||||| || ||| |||| || ||||| || || | Sbjct 582 CGGGTCAGCGATGTGGATGTTCAGAGACTGACTCTGGCAGATGTAA-GCGCCACGGTCAG 640 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | | || || | | || |||||| ||||||||||| || ||| || ||| || Sbjct 641 CCGACAGATCCAGCACGGCCTTCTGTTTGATCTCCCACACAGTTTTGTACTTGTCCTTGA 700 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133 ||| | || | | | || | ||| | || || ||| | | ||| || Sbjct 701 CGTGGTCTGGAATGGCCT-TGACCTTCTGCACAGATCCACCGTCATTTA-GAATCTGAT- 757 Query 204134 CTCGT-CTCCT-CCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 ||| || || ||| || |||| | || |||||| || ||||| ||||| Sbjct 758 TACGTACTTCTGGTGTCCAGATTCCCAGCTCAATAAGCTCCTTCATCAGGTACTTGTTGA 817 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 |||| ||| || |||| |||||| | ||| || ||| |||| ||| | || |||| Sbjct 818 CGATCGTAAACTCGCCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAAGGCTCGA 877 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | ||| |||||||| | |||||||| ||| ||||| ||||| || || | |||| Sbjct 878 TGGACTCATTGTTGCCCAGGATCTGAGCTGTGGACGCCGTCGGCATCGGTGCAACCAGCA 937 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAG-TCGTGCATC 204370 | |||||||| | ||||||||| || ||| || | | |||| || | || Sbjct 938 GTGAGTTGCGAAGACCGTATTTGATTACGTCATCCTTGAGTGCCGCCCAGTTCCAGAGTC 997 Query 204371 GCACTG--GGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428 || ||| | |||||||||||||||||||| |||| ||| | |||| | ||| || Sbjct 998 CAGATGCAGGTGTGACGCCCCACATGTCGAACTGGAAGACGCCCTTACTGGCAGGGGAGC 1057 Query 204429 CCTTGTACGTC 204439 ||| | ||||| Sbjct 1058 CCTGGAACGTC 1068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795000472737520