Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq7887 165 9e-36 seq9710 154 2e-32 seq5421 145 9e-30 seq7195 123 3e-23 seq13260 87.8 2e-12 >seq7887 Length=10481 Score = 165 bits (182), Expect = 9e-36 Identities = 170/220 (77%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||| || |||| || |||||| ||||| |||||||| || |||||||| | Sbjct 1214 ACGCAGCACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCC 1155 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| |||||||||||||||||||| |||| ||||||||||| | ||| | || |||||| Sbjct 1154 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 1095 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||| |||| ||||| | | | || | |||| || ||||| || | ||||| Sbjct 1094 GTCCTGGATTTTCTGCTTGA-CATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGA 1036 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 |||| |||||||| || || || || || || |||||||| Sbjct 1035 TGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 996 >seq9710 Length=10376 Score = 154 bits (170), Expect = 2e-32 Identities = 150/191 (79%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||||||||| |||||||| || || ||||| |||| || ||||||||||||||||| | Sbjct 864 CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 923 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||||||||| | ||| | | ||||||||| ||| |||| ||||| | | | Sbjct 924 TCAGACGCTGCTGGTCAGGCGGGATTCCYTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 982 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | ||||| || ||||| |||| ||||||||| |||||||||| || || ||| Sbjct 983 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 1042 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 1043 AAGATCTGCAT 1053 >seq5421 Length=2020 Score = 145 bits (160), Expect = 9e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| |||| || |||||| ||||| ||||||||| || ||||| | Sbjct 1358 ACGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 1299 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||| ||||| || | |||||||||||| | ||| | || ||||| Sbjct 1298 ATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTT 1239 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||||||| ||| | ||| | | | || ||| || ||||| || | ||||| Sbjct 1238 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 1180 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || |||||||||||||| || |||||||| ||||| Sbjct 1179 TCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 1143 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||| | |||||| |||| || |||||| ||||| ||||||||| Sbjct 1143 TGCCACCACGCAGACGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGC 1084 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || ||||||||||| ||||| || | |||||||||||| | || Sbjct 1083 TCAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCG 1024 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || ||||||||| ||||||| ||| | ||| | | | || ||| || ||| Sbjct 1023 GGATGCCTTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCC 965 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||| || |||||||| ||||| || || ||||| ||||| Sbjct 964 ACGTCGAGCGTGATCGTCTTGCCCGTTAGCGTCTTCACGAAGATCTGCAT 915 Score = 134 bits (148), Expect = 2e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||||| |||| ||| |||||| ||||| ||||| || Sbjct 915 TGCCACCACGCAGACGCAGTACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAATCAC 856 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || ||||||||||| ||||| |||| |||||||||||| | || Sbjct 855 TCAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCG 796 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || ||||||||| ||||||| ||| | ||| | | | || ||| || ||| Sbjct 795 GGATGCCTTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCC 737 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || | |||||| || |||||||| ||||| || || || || ||||| || Sbjct 736 ACGTCGAGCGTGATCGTCTTGCCCGTTAGCGTCTTCACGAAAATCTGCATCTT 684 >seq7195 Length=47515 Score = 123 bits (136), Expect = 3e-23 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| || || || | | ||||| ||||| || | ||| |||||| ||||| ||||| Sbjct 44818 TTAGTTTCCGCCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTA 44759 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||| || ||||| |||| || |||||||| || ||||| |||| ||||||||||| Sbjct 44758 GTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTC 44699 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538 | ||| | || ||||||||| |||||| | ||| | ||| | | | || ||| | Sbjct 44698 AGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTCA-CGTTGTCGATCGAGTCCGAAG 44640 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| || || || |||||||||| || || || ||||| ||||| Sbjct 44639 GCTCCACGTCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 44585 Score = 122 bits (134), Expect = 1e-22 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||||| || | ||| |||||| ||||| ||||||||| Sbjct 44585 TGCCACCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGC 44526 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || |||||||| || ||||| |||| ||||||||||| | || Sbjct 44525 TCAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGCG 44466 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || ||||||||| |||||| | ||| | ||| | | | || ||| | ||| Sbjct 44465 GGATGCCTTCCTTGTCCTGGATCTTTTGCTTCA-CGTTGTCGATCGAGTCCGAAGGCTCC 44407 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || |||| || || || |||||||||| || || || || || ||||| ||| Sbjct 44406 ACGTCCAGGGTAATCGTCTTGCCCGTCAAAGTCTTGACGAAAATCTGCATCTTG 44353 >seq13260 Length=2999 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| || || || | | ||||| ||||| |||| ||| |||||| ||||| ||||| Sbjct 135 TTAGTTTCCGCCGCGAAGACGCAGTACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTA 76 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || ||||| | || || ||||||||||| ||||| |||| |||||||||||| Sbjct 75 GTCACTCAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTC 16 Query 46480 GGCCGG 46485 | ||| Sbjct 15 AGGCGG 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565128411672840