Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5234 215 5e-51 seq6779 187 2e-42 seq7887 149 6e-31 seq5421 125 7e-24 seq9710 123 2e-23 seq7195 120 3e-22 seq13260 93.3 4e-14 >seq5234 Length=8456 Score = 215 bits (238), Expect = 5e-51 Identities = 386/558 (69%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| || ||||| |||| |||||||| | ||||| ||||| ||| | | Sbjct 5508 GCAGGCGAAGTCCGTGTGCATACCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAG 5449 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 || ||||||||||| || || || ||||| || |||| | ||| ||||| ||||| Sbjct 5448 TCCAGGCATGAGGCCACGCTTCTTAAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAA 5389 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || |||||| ||||| || ||||||| || ||||| | | | || | | | Sbjct 5388 GATGCCCTCAACGGCAGCAAAAGCCAGTAGACGCTCCGGGTAGGAGGACACACGAGGGTC 5329 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTT--TGACGCACGGCATCGTTTCGATGGCG 133131 | ||| |||||||| | || |||||| |||||||||| || || || || || Sbjct 5328 GCACCACTTGAGCGCCCAGTGTGC--TTTCTTCGTGACGCACGGAATGGTCTCAATCGCA 5271 Query 133132 TTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATAC 133191 ||||| | | ||||| || | ||| ||||| ||||| || || Sbjct 5270 CGCAACAGATGATCCTTCTCGATCGCATCCTTGATGTACGTGTCAATGAGCAGTGAGTAG 5211 Query 133192 ATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACC 133251 | |||||||| | |||||| |||||||| || || ||||| ||||| || ||||| | Sbjct 5210 ACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAATCCGTAGAAGCATCGAGCCTCAGGC 5151 Query 133252 ACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCG 133311 ||||||||||| | | ||| | | ||| || ||||| ||||| ||||||||||| Sbjct 5150 ACCTGCACTTCATTACTGAAGTTCATGGCCAAGTTCTCGTTCACGATTCCGTCGCTGGCT 5091 Query 133312 GCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC--GCTCCC 133369 ||||| ||||| ||||||||||||||||| |||||||||||||| | |||| | ||| Sbjct 5090 GCGAAGAAGGCGAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGT-AAGCTTGGTCCA 5032 Query 133370 AGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTT 133429 | | | | ||| | |||||| | |||||| | ||||| || || |||||||| | Sbjct 5031 ATCCTTGAG-GTCGTGCACCAGGTCGATCTCCTCAGCAGTCCAGAAGGAGGCCTCGGCCT 4973 Query 133430 TTTTGTACATACTCCACA 133447 | |||||||| ||||| Sbjct 4972 TCTTGTACATCTGCCACA 4955 >seq6779 Length=4860 Score = 187 bits (206), Expect = 2e-42 Identities = 410/608 (67%), Gaps = 8/608 (1%) Strand=Plus/Plus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 |||| ||||| || || || |||| |||||| || | || | ||||| || Sbjct 657 ACATTAAGCACGCGAAATCCGTGTGCATGCCCTCATCACGACTGATCATCTCGTTTGAGA 716 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG--CC 133004 | ||| || ||||| || ||||| || || ||||| || | || ||| || || Sbjct 717 AGCTCAGACCAGGCATAAGACCGCGCTTCTTAAGCCAGAAAACGGAAC--AAAATGACCC 774 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC 133064 ||||||||||| || || || || ||||| || | ||| ||||| || ||| | | Sbjct 775 CGAAAAGAAGATACCTTCCACTGCAGCGAACGCTAGCAGACGCTCTGCGTACGACGACAC 834 Query 133065 TTTGCTGGCGAT-CCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 || || | ||| |||||||| | |||||| | | ||| || || || || | Sbjct 835 AC-GCGGGTCACACCATTTTAGCGCCCAGTTGGCCTTCTTCTGGACACATGGGATAGTCT 893 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGG 133183 |||| || | ||| || |||||| | | | | ||| ||||| || || Sbjct 894 CGATAGCACGTAGCAAGTGGTCTTTCTCCACGGCGTCCTTGATGTATGTGTCAATAAGCA 953 Query 133184 TCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCG 133243 |||||||| |||||||| | ||||| || ||||| || |||||||| ||||| || | Sbjct 954 GCGAATACACCTCCGAGTGGATATTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGAG 1013 Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGT 133303 | || | ||||||||| | | ||| | | |||| || ||||||||||| |||| Sbjct 1014 CTTCCGGTATCTGCACTTCATTACTGAAGTTCATGGCCAGGTTCTCGTTGACGATACCGT 1073 Query 133304 CGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC 133363 | || || ||||| || ||||| |||| ||||||||| || ||||||||||| | | Sbjct 1074 CACTAGCAGCGAAGAACGCCAGAACGTACTTGATGAAGTGACGCTCGTTGTCTGTGAGTT 1133 Query 133364 GCTCCCAGTCGCGCGTGTCCTTGGA-CAGGTCCACCTCCTCGACGGTCCAAAACGACGCC 133422 |||||||| | | | || | ||| |||| ||||||| | ||||| || || ||| Sbjct 1134 TTGCCCAGTCG-TTGAGATCGTGCACCAGRTCCAGCTCCTCGGCCGTCCAGAAGGAGGCC 1192 Query 133423 TCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGG 133482 || || || |||||||| ||||| ||| | || ||||| || | ||| || ||| Sbjct 1193 TCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGAATGGGGAAGAGCACGAAGCGG 1252 Query 133483 CGGGGGTT 133490 ||| || Sbjct 1253 TTGGGATT 1260 >seq7887 Length=10481 Score = 149 bits (164), Expect = 6e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || || |||||||| |||||||| ||||||| ||| | Sbjct 996 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCG 1055 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 | |||||| | | | | || | ||||||| ||||| ||||| || |||||| || Sbjct 1056 TCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCAT-CCCGCCTGA 1114 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| ||||| || |||| ||||| || ||||| Sbjct 1115 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTA 1174 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| |||| ||||| | ||||||||| || | || || Sbjct 1175 CAACATCCAGAAGGAGTCGACCCTGCACCTTGTGCTGCGTCTGCGTGGTGG 1225 >seq5421 Length=2020 Score = 125 bits (138), Expect = 7e-24 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| |||||||| || ||||| ||||||| ||| | | Sbjct 915 ATGCAGATCTTCGTGAAGACGCTAACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 974 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || | || || | ||||| || || || |||||| |||| Sbjct 975 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGCAT-CCCGCCTGACC 1032 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| ||||| || || | ||||| || | |||||||| Sbjct 1033 AGCAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACGCTGAGCGACTACA 1092 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| | |||||||| ||||||| ||| || | || ||| Sbjct 1093 ACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGTCTGCGTGGTGGC 1142 Score = 122 bits (134), Expect = 9e-23 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || ||||| |||||||| || ||||| ||||||| ||| | Sbjct 684 AAGATGCAGATTTTCGTGAAGACGCTAACGGGCAAGACGATCACGCTCGACGTGGAGCCG 743 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-G 38358 | ||| | | |||| | || | || || | ||||| || || || |||||| | Sbjct 744 TCGGACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGCAT-CCCGCCTG 801 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| || |||| ||| ||||| ||||| || || | ||||| || | || | Sbjct 802 ACCAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACACTGAGTGATT 861 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| ||||| | |||||||| |||| |||||| || | || ||| Sbjct 862 ACAACATCCAGAAGGAGTCTACGCTGCACCTGGTACTGCGTCTGCGTGGTGGC 914 Score = 120 bits (132), Expect = 3e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| |||||||| || ||||| ||||||| ||| | | Sbjct 1143 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 1202 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || | || || | ||||| || || || |||||| |||| Sbjct 1203 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGCAT-CCCGCCTGACC 1260 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| ||||| || || | ||||| || | |||||||| Sbjct 1261 AGCAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACGCTGAGCGACTACA 1320 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | |||||||| ||||||| ||| | | ||||| Sbjct 1321 ACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGTCTTCGCGGCGG 1369 >seq9710 Length=10376 Score = 123 bits (136), Expect = 2e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | |||||||| |||||||| | ||||| ||| | || Sbjct 1053 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 994 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||||| | | | | || | ||||||| ||||| || ||||| |||||| ||||| Sbjct 993 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGARGGAAT-CCCGCCTGACCA 935 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 934 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTCTCGGACTACAA 875 Query 38423 CATCCAAAAGG 38433 ||||||||||| Sbjct 874 CATCCAAAAGG 864 >seq7195 Length=47515 Score = 120 bits (132), Expect = 3e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| || || ||| | ||||| ||| | | Sbjct 44585 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAGACGATTACCCTGGACGTGGAGCCTTCG 44644 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || |||| |||| ||||| || || || |||||| |||| Sbjct 44645 GACTCGATCGACAACG-TGAAGCAAAAGATCCAGGACAAGGAAGGCAT-CCCGCCTGACC 44702 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| || || |||||||| |||| ||||| || | |||||||| Sbjct 44703 AGCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACA 44762 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | || || || |||| |||||| || | ||||| Sbjct 44763 ACATCCAGAAGGAGTCTACTCTTCACCTGGTTCTGCGTCTGCGTGGCGG 44811 Score = 118 bits (130), Expect = 1e-21 Identities = 169/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || | |||||||| || || ||| | ||||| ||| | Sbjct 44354 AAGATGCAGATTTTCGTCAAGACTTTGACGGGCAAGACGATTACCCTGGACGTGGAGCCT 44413 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-G 38358 | ||| | | |||| | || |||| |||| ||||| || || || |||||| | Sbjct 44414 TCGGACTCGATCGACAACG-TGAAGCAAAAGATCCAGGACAAGGAAGGCAT-CCCGCCTG 44471 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| || || | ||| || || |||||||| |||| ||||| || | ||||| Sbjct 44472 ACCAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACT 44531 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| ||||| | || || || |||| |||||| || | || ||| Sbjct 44532 ACAACATCCAGAAGGAGTCTACTCTTCACCTGGTTCTGCGTCTGCGTGGTGGC 44584 >seq13260 Length=2999 Score = 93.3 bits (102), Expect = 4e-14 Identities = 94/121 (78%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||||||| ||||| ||||| || |||| ||| ||||| ||||| || || | ||||| | Sbjct 8 TCCCGCCTGACCAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACGC 67 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 | | |||||||||||||| ||||| | |||||||| |||| |||||| | | |||| Sbjct 68 TGAGTGACTACAACATCCAGAAGGAGTCTACGCTGCACCTGGTACTGCGTCTTCGCGGCG 127 Query 38470 G 38470 | Sbjct 128 G 128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500075472625280