Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq10576 242 5e-59 seq5234 129 7e-25 seq10590 104 3e-17 seq6779 86.0 8e-12 seq5172 86.0 8e-12 >seq10576 Length=3682 Score = 242 bits (268), Expect = 5e-59 Identities = 1062/1651 (64%), Gaps = 56/1651 (3%) Strand=Plus/Minus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| ||||| || || || ||||||||||| || || ||| | || || |||| | Sbjct 2135 TTCACGCACGCGACCCCTACTCTCTTCAACGCCGGCACGCCACGTCCTCAGCTGTCTTCT 2076 Query 111765 TGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA 111824 |||||||| | |||| |||| || || ||| | ||||| |||| ||| |||| || Sbjct 2075 TGTTTCCTATTGGCAATGCAGGATGACTCGATCGAGGGCATCTACGACACGCTCAAGCAA 2016 Query 111825 TGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCC 111884 || || || || |||||||| || ||||| || || || || | || ||||| Sbjct 2015 TGCGCGTGCATATCCAAGTGGGCGGGAGGTATTGGCATCAGTATGCACAACATCCGAGCC 1956 Query 111885 AACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 111944 | ||| || | || || ||||| || |||| ||||| || ||||| || Sbjct 1955 ACCAACAGCTACATCCGCGGCACGAATGGCTCCTCCAATGGCATTATCCCCATGCTGCGT 1896 Query 111945 GTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATC 112001 || ||||||| ||| || |||||||| |||| | || || ||||| ||||| | Sbjct 1895 GTGTTTAACGACACGGCTCGCTATGTGGACCAGGGCGGAGGTAAGCGCAAAGGATCCTTT 1836 Query 112002 GCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAAC 112061 || ||||| | |||||||||||||| || | | |||||||| || |||| ||| Sbjct 1835 GCTATCTATTTGGAGCCATGGCACGCAGACGTGTTCGAGTTCCTGGATCTGCGCAAGAAC 1776 Query 112062 CAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCT 112120 || || | ||| | | | | || || || | |||| ||| |||||| | || ||||| Sbjct 1775 CACGGCAACGAGCTG-CACCGCGCTCGTGACTTGTTCTACGCGCTCTGGGTGCCTGATCT 1717 Query 112121 CTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACC 112180 ||||||||||||||| |||| | ||| || ||| ||| || ||||| || | || || Sbjct 1716 CTTCATGAAGAGAGTGGAGGCCAATGGTAAGTGGAGTCTATTCTGTCCTAACGAAGCTCC 1657 Query 112181 CGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAG 112239 ||||||| ||| ||| | ||| || ||||||||||| || || |||||||||| | | Sbjct 1656 TGGTCTCTACGAGTGCTG-GGGAGACGAGTTTGAAGCGCTGTATGAAAAGTACGAGAAGG 1598 Query 112240 AAAGTCGGGCGACTGCGACGGT-----GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAA 112294 || | || || ||| | ||||| || ||||| || || || | Sbjct 1597 AAGGACGCGCTCGGAAGACCATTAACGCCCAGCAGC-----TGTGGTTCGCCATCCTGGA 1543 Query 112295 GTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAG 112354 | || | |||||| || || | |||||| ||||| ||||| |||| ||| Sbjct 1542 CGCGCAGATCGAGACGGGAGTGCCCTTTATGCTCTACAAGGACGCAGCCAACCGCAAGTC 1483 Query 112355 TAATCAAAAGAATTTGGGTGTGATCAAGAGTTC---CAACCTCTGTACAGAAATCTTGGA 112411 || || |||| |||| |||| | || |||| | || || | |||| Sbjct 1482 GAACCAGCAGAACCTGGGCACGATC---CGCTCCAGCAACTTATGCTGCGAGGTGATGGA 1426 Query 112412 ATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTA 112471 | || |||||| ||| ||||| ||| | || || | || || ||||||| Sbjct 1425 GTACACGTCGCCCGATGAGGTGGCAGTGTGCAACTTGGCGTCTGTGGCGCTGCCCAAGTT 1366 Query 112472 TGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGT 112531 ||||| | || | || || || | ||||| | ||||| || | Sbjct 1365 CGTGGA-CGAGGG-----CGTGTTCGACTACCAGAAACTGTATGAAGTGGTCAAGGTGAT 1312 Query 112532 CACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTA 112590 ||| ||||| |||| || ||||| || | || || || | ||| ||||| | Sbjct 1311 CACTCGCAACCTCAACAAGGTCATTGACGTCAACTACTATCCTGTAGCAGA-GGCTCGGA 1253 Query 112591 AATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCA 112650 | || || ||| | || || || |||||| | || ||||| ||||| || |||| |||| Sbjct 1252 AGTCCAACATGCGTCATCGCCCCATTGGTATTGGCGTCCAGGGTCTGGCTGATGCGTTCA 1193 Query 112651 TTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTG 112710 | || | | || || || | | |||| | || |||| | || || | Sbjct 1192 TCCTCATGAACTATGCGTTCGAGAGCAAGCAAGCTAGTGAGCTCAACAAGAACATCTTCG 1133 Query 112711 AGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGG--TTGATGGTCC 112768 |||| || || ||||||| | ||| || |||| | || ||| ||| ||||| Sbjct 1132 AGACGATCTACTACGCCGCAATGGAGACGTCCATGGAGATCGCCAAGGAATTG--GGTCC 1075 Query 112769 ATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGG 112826 || || || || |||| || || || || ||||| || | || || || |||||| Sbjct 1074 GTACGAGACGTTCCAGGGCTCCCCTGC--CAGTAAGGGCGTCTTCCAGTTCGACATGTGG 1017 Query 112827 GAAGGTGAGACC--AAGCTTCACTACG--ACTGGGACGCTCTCAAGGA--ACG-CATCAA 112879 | || | ||| | || ||| | |||||| || |||||||| ||| |||| Sbjct 1016 G-GCGTCACACCTGCATCTGGACTCTGGAACTGGGCGGCACTCAAGGATGACGTAATCA- 959 Query 112880 GGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACA 112939 | | |||||||| ||| || || | ||||| ||||| || || ||||| || || Sbjct 958 --AATACGGTCTTCGCAACTCACTGCTGGTTGCACCGATGCCGACGGCGTCCACAGCTCA 901 Query 112940 AATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAAC 112999 ||| |||| || ||||| | | | || || |||||| | ||||| || | | Sbjct 900 GATCCTGGGCAACAATGAGTCCATCGAGCCTTACACGTCCAACATGTACAACCGCCGTGT 841 Query 113000 CCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGG 113059 || || || |||||| ||| ||||||||| | || || | || || | ||| | || Sbjct 840 GCTGGCCGGCGAGTTTACGATCGTCAACAAGTACCTGATGAAGGAGCTTATTGAGCTGGG 781 Query 113060 TCTCTGGTC-CAAGGA-TATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAAT 113117 ||||| | | || | || | | ||| || | || | ||||| || | || || Sbjct 780 AATCTGGACACCAGAAGTACGTA--ATCAGATTCTAAATGACGGTGGATCTGTGCAGAAG 723 Query 113118 ATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATG 113177 | || |||||||| | | ||| | |||| || || ||||| ||||| | Sbjct 722 GTCAAGGCCATTCCAGACCACGTCAAGGACAAGTACAAAACTGTGTGGGAGATCAAACAG 663 Query 113178 AAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTT-CATTGATCAAAGTCAAAGTAT 113236 |||| || | || || | || || ||||| ||||| ||| || ||||| | | Sbjct 662 AAGGCCGTGCTGGATCTGTCGGCTGACCGTGG-CGCTTACATCTGCCAGAGTCAGTCTCT 604 Query 113237 GAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTG 113296 ||| | ||| | || || || ||| ||| | || |||||| | ||| || Sbjct 603 GAACATCCACATCGCTGACCCGACTATCAGCAAACTCACGTCCATGCACTTCTACGCCTG 544 Query 113297 GAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 ||||||||| ||||| || || ||||| ||| Sbjct 543 GAAGAAGGGACTCAAGACCGGCATGTACTAC 513 >seq5234 Length=8456 Score = 129 bits (142), Expect = 7e-25 Identities = 191/270 (71%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| ||| || ||||||| |||||| | || || || || || | Sbjct 5221 CTCATTGACACGTACATCAAGGATGCGATCGAGAAGGATCATCTGTTGCGTGCGATTGAG 5280 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 102167 || |||| || | |||||||| | ||||| | ||||||| || | ||| Sbjct 5281 ACCATTCCGTGCGTCACGAAGAAAGCACACTGGGCGCTCAAGTGGTGCGACCC----TCG 5336 Query 102168 CGT----TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 || |||| | ||||| || | || ||||| |||||||| ||||||||||| Sbjct 5337 TGTGTCCTCCTACCCGGAGCGTCTACTGGCTTTTGCTGCCGTTGAGGGCATCTTCTTCTC 5396 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 |||||||||||| | || | ||||| |||||||| || |||||||| || ||| |||| Sbjct 5397 GGGTTCCTTCTGCTCCATCTTCTGGCTTAAGAAGCGTGGCCTCATGCCTGGACTCAGCTT 5456 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| |||||||| ||| |||||||||||| Sbjct 5457 CTCGAACGAGCTCATCAGTCGTGACGAGGG 5486 >seq10590 Length=17674 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 176876 AGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCG 176935 || |||| ||| | ||||||||| || ||| | || ||||| ||||||||||||||| Sbjct 10478 AGTTGTGCGACCGTGGCATCACGCACGTTCAAAAGTTTGCCACGCAGAGGGAAGACACCG 10419 Query 176936 TAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCC 176995 || || || || ||||| || | || || || || || || | ||||| ||||||||| Sbjct 10418 TACTGGTCACGTCCAACGACTGCCAGTCCAGCCACTGCAAGAGCCTTCGCTGAATCACCC 10359 Query 176996 TCTGTCACGATGAGTGTACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCC 177055 ||||||| || || | |||| || || | | ||| ||| ||||||||| || Sbjct 10358 TCTGTCAATATAAGCGAGCACTCGCTTGAGCGAGGACCACCGGCCAGGTTCGCATCCTCA 10299 Query 177056 AATTTGGGAA 177065 | ||||||| Sbjct 10298 AGCTTGGGAA 10289 >seq6779 Length=4860 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || || ||||||||||| || || || || || | ||| ||||| |||||||| ||| Sbjct 795 GTGGAAGGTATCTTCTTTTCGGGGTCATTTTGTTCCGTTTTCTGGCTTAAGAAGCGCGGT 736 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 || ||||| ||||| ||||||| |||||| | ||| |||||| ||||| Sbjct 735 CTTATGCCTGGTCTGAGCTTCTCAAACGAGATGATCAGTCGTGATGAGGG 686 >seq5172 Length=6496 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 102217 TCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTC 102276 ||||||| || || |||||| | ||| ||||| ||||| || ||||| ||||| |||| Sbjct 2940 TCTTCTCGGGCTCGTTCTGCTCAGTTTTCTGGCTTAAGAAACGCGGTCTTATGCCTGGTC 2999 Query 102277 TCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 | ||||||| |||||| | ||| |||||||||||| Sbjct 3000 TGAGCTTCTCAAACGAGATGATCAGTCGTGACGAGGG 3036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620621611288240