Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq10576 250 3e-61 seq7345 158 1e-33 seq14012 93.3 5e-14 seq5234 93.3 5e-14 >seq10576 Length=3682 Score = 250 bits (276), Expect = 3e-61 Identities = 1084/1687 (64%), Gaps = 48/1687 (3%) Strand=Plus/Plus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| || || ||||| || |||||| ||||| | ||||| || | ||||||| Sbjct 514 TAGTACATGCCGGTCTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGAGTTTG 573 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATG-AATCGACC 109532 | ||||| | || | ||||| |||||| ||| |||| || || || Sbjct 574 CTGATAGTCGGGTCAGCGATGTGGATGTTCAGAGACTGACTCTGGCAGATGTAAGCG-CC 632 Query 109533 ACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAA 109592 ||| ||||||| || || | | ||| || | || ||||| ||||| |||||| Sbjct 633 ACGGTCAGCCGACAGATCCAGCACGGCCTTCTGTTTGATCTCCCACACAGTTTTGTACTT 692 Query 109593 ATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCAT 109652 | ||||| | || |||||| || || || || | ||| ||||| | || | || Sbjct 693 GTCCTTGACGTGGTCTGGAATGGCCTTGACCTTCTGCACAGATCCACCGTCATTTAGAAT 752 Query 109653 GAGAT--CCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGC 109710 ||| | | | ||| | | ||||| || | || | || || | | || | | Sbjct 753 CTGATTACGTACTTCTGGT--GTCCAGATTCCCAGCTCAATAAGCTCCTTCATCAGGTAC 810 Query 109711 TTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAG 109770 |||||||| | ||| || || || || || ||| ||| ||||| | |||||| Sbjct 811 TTGTTGACGATCGTAAACTCGCCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAA 870 Query 109771 GGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCC 109830 || |||| ||||||||||||| ||||| || || ||||| || || ||||| || || Sbjct 871 GGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCTGTGGACGCCGTCGGCATCGGTGCA 930 Query 109831 ATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCA 109890 | || || ||| || ||||| | | |||| || | ||| |||| | Sbjct 931 ACCAGCAGTGAGTTGCGAAGACCGTATTTGATTACGTCATCCTTGAGTGCCGCCCAGTTC 990 Query 109891 TAACGACCACTAAATTTAG-TCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGC 109949 | | ||| || || | | || ||||||| || || | || |||| | Sbjct 991 CAGAGTCCAG---ATGCAGGTGTGACGC-CCCACATGTCGAACTGGAAGACGCCCTTACT 1046 Query 109950 AGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGC 110009 ||||| || |||| ||| ||||||||| ||| ||| ||| | ||| || | Sbjct 1047 GGCAGGGGAGCCCTGGAACGTCTCGTACGGACCCAATTCCTTGGCGATCTCCATGGACGT 1106 Query 110010 CTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGG---CGAGACTC 110066 ||| | ||| || | || || ||||| || || | || |||| | || | Sbjct 1107 CTCCATTGCGGCGTAGTAGATCGTCTCGAAGATGTTC---TTGTTGAGCTCACTAGCTTG 1163 Query 110067 TTCACAGTCGAAGGGA-AGACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGA 110125 | | ||||| | | || || | || | ||| |||| || |||||||| || || | Sbjct 1164 CTTGCTCTCGAACGCATAGTTCATGAGGA-TGAACGCATCAGCCAGACCCTGGACGCCAA 1222 Query 110126 GACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGC 110185 ||||||||||||||| |||||| || ||||| | |||| || || ||||| Sbjct 1223 TACCAATGGGGCGATGACGCATGTTGGACTTCCGAGCCTCTGCTACAGGATAGTAGTTGA 1282 Query 110186 GGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGT 110245 ||| |||||| ||||| || || | ||| | ||||| ||||| | || Sbjct 1283 CGTCAATGACCTTGTTGAGGTTGCGAGTGATCACCTTGACCACTTCATACAGTTTCTGGT 1342 Query 110246 AATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGC 110305 | |||||| || | || | || | ||||| || || | |||||| | |||| Sbjct 1343 AGTCGAACA----CGCC--CTCGTCCACGAACTTGGGCAGCGCCACAGACGCCAAGTTGC 1396 Query 110306 ACACAGAAGTCTCGTCTTTGTCG--GTGTATTCCAAAATTTCCGTACACAAGTTG---GA 110360 |||| | ||| || | || ||||| |||| | || || |||||| || Sbjct 1397 ACACTGCCACCTCATCG--GGCGACGTGTACTCCATCACCTCGCAGCATAAGTTGCTGGA 1454 Query 110361 ACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAG 110420 | | || |||| ||||| ||| ||||| ||| |||| ||| ||||| ||||| Sbjct 1455 GCGGATCGTG---CCCAGGTTCTGCTGGTTCGACTTGCGGTTGGCTGCGTCCTTGTAGAG 1511 Query 110421 CATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGC 110480 ||| | || || || || |||| | | || ||||| ||| || | || | Sbjct 1512 CATAAAGGGCACTCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTG- 1568 Query 110481 GGGGACAGTTGCGTT---AGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAA 110537 || | | | | || |||| | ||||||| ||||||||| |||| | ||||| Sbjct 1569 GGCGTTAATGGTCTTCCGAGCGCGTCCTTCCTTCTCGTACTTTTCATACAGCGCTTCAAA 1628 Query 110538 TTCCTGTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAAT 110596 || | ||| | ||| || | ||||| || | || |||||||| || ||| | Sbjct 1629 CTCGTCTCCCCAGCAC-TCGTAGAGACCAGGAGCTTCGTTAGGACAGAATAGACTCCACT 1687 Query 110597 TTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGT 110656 | ||| |||| || ||||||||||| || ||||| | ||| | ||| |||| | || Sbjct 1688 TACCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAGAACAAGT 1747 Query 110657 CACG-GCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATA 110715 |||| || | || || | | || ||||| ||| || |||| || || | | Sbjct 1748 CACGAGCGCGGTGCAGCT-CGTTGCCGTGGTTCTTGCGCAGATCCAGGAACTCGAACACG 1806 Query 110716 TCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGACC--CGCC-TGG 110772 || | ||||||||| || | ||||| ||| | |||||| || || ||| |||| ||| Sbjct 1807 TCTGCGTGCCATGGCTCCAAATAGATAGCAAAGGATCCTTTGCGCTTACCTCCGCCCTGG 1866 Query 110773 TTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGA 110832 | |||||||| || ||| | || || || | ||||| || ||||| |||| ||| Sbjct 1867 TCCACATAGCGAGCCGTGTCGTTAAACACACGCAGCATGGGGATAATGCCATTGGAGGAG 1926 Query 110833 CCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATA 110892 ||||| || || | || | || |||| || |||| ||| ||| || |||||| Sbjct 1927 CCATTCGTGCCGCGGATGTAGCTGTTGGTGGCTCGGATGTTGTGCATACTGATGCCAATA 1986 Query 110893 CCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATC 110952 || ||||||||||| || || || | |||| || | || || || || ||| Sbjct 1987 CCTCCCGCCCACTTGGATATGCACGCGCATTGCTTGAGCGTGTCGTAGATGCCCTCGATC 2046 Query 110953 GAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCA 111012 || || ||| | || | ||| || |||||||||| ||||||||| ||||| || || Sbjct 2047 GAGTCATCCTGCATTGCCAATAGGAAACAAGAAGACAGCTGAGGACGTGGCGTGCCGGCG 2106 Query 111013 TTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCG 111072 |||||||| ||||| ||||| || |||| | ||| ||||| | ||| || ||| Sbjct 2107 TTGAAGAGAGTAGGGGTCGCGTGCGTGAAGAACTTTTGCGACATGAGCTCGTACGTCTCG 2166 Query 111073 AGTGCGG 111079 || |||| Sbjct 2167 AGCGCGG 2173 >seq7345 Length=15827 Score = 158 bits (174), Expect = 1e-33 Identities = 328/482 (68%), Gaps = 15/482 (3%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || || | ||| | || ||||||||| | ||||| Sbjct 7153 ATCTGCCGGTCGAATCGACCAGGACGCAGGATAGCCTTGTCTAGAATATCGGCTCGGTTC 7094 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | || | || |||| ||| |||| | || ||| || ||||| || ||| Sbjct 7093 GTACCAGCGAGCACCACAACGCC---CTCACTCGAGTTGAAGCCATCCATCTCGACGAGC 7037 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTC 11673 | |||||| | || | |||||||||||||| | | | | |||| ||||| Sbjct 7036 AACTGGTTAAGAGTGTTCTCACGCTCATCGTTACCGCCCG-AGAAGTTGCCCTT-GCTTC 6979 Query 11674 TTAC-----CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728 | | || || || |||||||||||||| || || ||||| |||||| || | Sbjct 6978 GAGCACGCGCTACGGCATCGATCTCATCGATGAACACAATGCACGGAGCGTTGGCGCGAG 6919 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 ||| | ||| || ||||| ||||| || || ||||| |||||||| || | ||| | Sbjct 6918 CCTCCTTGAACAGGTCACGCACACGGGACGGACCCACACCGACGAACATTTCGATGAAAT 6859 Query 11789 TTGCGGCAGAAC-ACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 | | ||||| |||||| ||| || ||| | | |||||||| |||| || | Sbjct 6858 CCGAGCCAGAAATACTGAA-GAACGGTACACTGGCTTCACCAGCCGTGGCCTTGGCCAAC 6800 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 || |||||||||||||| || | |||| | || || ||||| |||||||||||||||| Sbjct 6799 AGCGTCTTACCCGTACCGGGCGGACCAACAAGCAGAGCGCCCTTGGGGATCTTGGCACCA 6740 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967 | | |||||| | || | ||||||||| | |||| | ||||| |||| Sbjct 6739 AGCTCCGTGAAGCGCTTCTGGTTACGCAAGAAGTCCACGAACTCCATGATTTCCTTCTTG 6680 Query 11968 GC 11969 || Sbjct 6679 GC 6678 >seq14012 Length=2092 Score = 93.3 bits (102), Expect = 5e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTT-GGCACGTGCCTGTTC 11735 |||| ||||||||||||||||||||| | ||| |||||| || || | ||| || Sbjct 1442 CCGATAGCGTCAATCTCATCGATGAAGATGATGCACGGTGCCTTCCGCTTG-GCCGACTC 1500 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || ||||| || || || || ||||| ||| ||||||| |||| | | | Sbjct 1501 GAACAGGTCACGCACGCGACGGGCGCCCACACCCACGTACATCTCCTCGAACTCCGATCC 1560 Query 11796 AGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 ||| | | | ||| || || | ||| ||||| || || |||||||| || ||||| Sbjct 1561 AGACGAATAGAAGAACGGCACTCCGGCCTCGCCAGCAATAGCACGAGCGAGCAGCGTCTT 1620 Query 11856 ACCCGTACCAGGTGCACCAG 11875 |||||| ||||| | |||| Sbjct 1621 ACCCGTTCCAGGCGGGCCAG 1640 >seq5234 Length=8456 Score = 93.3 bits (102), Expect = 5e-14 Identities = 129/179 (72%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || || || ||| ||||||||| || ||||| |||||||||||||| || | ||| Sbjct 5486 CCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGTCCAGGCATGAGGCCACGCTTC 5427 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||||| || || || || |||||||||||||| || || ||| Sbjct 5426 TTAAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAGATGCCCTCAACGGCAGCAAAA 5367 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGAC----TTGTCGAACCACTTGAGAGCCCAGT 119688 || | ||||||||| | ||| || || |||| |||||||||| ||||||| Sbjct 5366 GCCAGTAGACGCTCCG-GGTAGGAGGACACACGAGGGTCGCACCACTTGAGCGCCCAGT 5309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588861392632600