Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq10576 217 2e-51 seq6779 147 3e-30 seq5234 87.8 2e-12 seq14574 86.0 7e-12 seq5172 86.0 7e-12 seq10590 82.4 9e-11 >seq10576 Length=3682 Score = 217 bits (240), Expect = 2e-51 Identities = 1107/1733 (64%), Gaps = 54/1733 (3%) Strand=Plus/Plus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTG 105655 |||||||| |||||||||||||| | ||||| ||||| | ||||| || | ||| ||| Sbjct 514 TAGTACATGCCGGTCTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGAGTTTG 573 Query 105656 GACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATG-AAGCGACC 105714 || || || | ||| | |||| | ||||||||| ||| ||||| || Sbjct 574 CTGATAGTCGGGTCAGCGATGTGGATGTTCAGAGACTGACTCTGGCAGATGTAAGCG-CC 632 Query 105715 ACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAG 105774 ||| | |||| || ||| | || ||||| ||||| |||||||| || ||| Sbjct 633 ACGGTCAGCCGACAGATCCAGCACGGCCTTCTGTTTGATCTCCCACACAGTTTTGTACTT 692 Query 105775 ATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCAT 105834 | ||||| | ||||| || | || || || | || || || | || | || Sbjct 693 GTCCTTGACGTGGTCTGGAATGGCCTTGACCTTCTGCACAGATCCACCGTCATTTAGAAT 752 Query 105835 GAGATCCTTCATA-TCCTTG-GACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGC 105892 ||| | | || | || | | ||| | || | || | || || || | || | | Sbjct 753 CTGAT--TACGTACTTCTGGTGTCCAGATTCCCAGCTCAATAAGCTCCTTCATCAGGTAC 810 Query 105893 TTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAG 105952 |||||||| ||| |||||| || || || | | || ||||| | |||||| Sbjct 811 TTGTTGACGATCGTAAACTCGCCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAA 870 Query 105953 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 106012 || || | | | ||||| || |||| ||| || || ||||| || || ||||| ||||| Sbjct 871 GGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCTGTGGACGCCGTCGGCATCGGTGCA 930 Query 106013 ATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATG-CGT--TCCTTGAGAACATCCCAG 106069 | || || ||| |||||||| | || |||| ||| |||||||| | ||||| Sbjct 931 ACCAGCAGTGAGTTGCGAAGACCGTATT---TGATTACGTCATCCTTGAGTGCCGCCCAG 987 Query 106070 T--CGTAGTTGAGCTT--GGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG- 106123 | | ||| || | ||| | || ||||||| || || || | || ||||| Sbjct 988 TTCCAGAGTCCAGATGCAGGTGTGACGC-CCCACATGTCGAACTGGAAGACGCCCTTACT 1046 Query 106124 GACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTC 106183 | | ||||| |||| || ||||| || | ||| | | || | || | | Sbjct 1047 GGCAGGGGAG--CCCTGGAACGTCTCGTACGGACCCAATTCCTTGGCGATCTCCATGGAC 1104 Query 106184 GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCA 106243 | ||||| | |||| || || || || ||||| || | ||| | |||| Sbjct 1105 GTCTCCATTGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCACTAGCTTGC 1164 Query 106244 TCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAA 106303 | || || || ||| | || || |||| || ||||| || || || | | Sbjct 1165 TTGCTCTCGAACGCATAGTTCATGAGGATGAACGCATCAGCCAGACCCTGGACGCCAATA 1224 Query 106304 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT-CAACGGGATAAAAATTTCT 106362 ||||| || | || ||||| || ||||| || || ||| | || ||||| | || Sbjct 1225 CCAATGGGGCGATGACGCATGTTGGACTTCCGAGCC-TCTGCTACAGGATAGTAGTTGAC 1283 Query 106363 GTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA 106422 ||||||||| ||| || || || | | ||| | ||||| ||||| | || Sbjct 1284 GTCAATGACCTTGTTGAGGTTGCGAGTGATCACCTTGACCACTTCATACAGTTTCTGGTA 1343 Query 106423 ATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCA 106482 || || || ||| || || |||| || || || | || ||||| ||||| Sbjct 1344 GTCGAACACGCC---CTCGTCCACGA---ACTTGGGCAGCGCCACAGACGCCAAGTTGCA 1397 Query 106483 AACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTG---GAACT 106539 || ||| |||||| |||||||| | | || || |||||| || | Sbjct 1398 CACTGCCACCTCATCGGGCGACGTGTACTCCATCACCTCGCAGCATAAGTTGCTGGAGCG 1457 Query 106540 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCAT 106599 ||||| |||| |||| ||||| ||| |||| || |||||||||||||| Sbjct 1458 G---ATCGTGCCCAGGTTCTGCTGGTTCGACTTGCGGTTGGCTGCGTCCTTGTAGAGCAT 1514 Query 106600 GTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCTGG 106659 ||||| |||||||| |||| | | || || || ||||| || ||||| Sbjct 1515 AAAGGGCACTCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCACA-----GCTGCTGG 1569 Query 106660 TAC--AATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAAC 106714 ||||| || || ||||| ||| |||||||||| || || ||||||||| Sbjct 1570 GCGTTAATGGTCTTCCGAGCGCGTCCTTCCTTCTCGTACTTTTCATACAGCGCTTCAAAC 1629 Query 106715 TCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTG 106773 || || ||| | || ||| ||||||| || || | || |||||||| ||| ||| | Sbjct 1630 TCGTCTCCC-CAGCACTCGTAGAGACCAGGAGCTTCGTTAGGACAGAATAGACTCCACTT 1688 Query 106774 ACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATC 106833 |||| |||| || | ||||||||| || || || | ||| || | | || | || Sbjct 1689 ACCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAGAACAAGTC 1748 Query 106834 TCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATAT 106892 | | | | | || | |||| || ||||| || | || |||||||| | | | Sbjct 1749 ACGAGCGCGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGATCCAGGAACTCGAACACGT 1807 Query 106893 CCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGAT 106949 | |||||||||||||| | ||||| || | ||||| || || || || | || | Sbjct 1808 CTGCGTGCCATGGCTCCAAATAGATAGCAAAGGATCCTTTGCGCTTACCTCCGCCCTGGT 1867 Query 106950 TTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGAC 107009 |||||||| || ||| ||||||| || || ||||| || ||||| |||| || | Sbjct 1868 CCACATAGCGAGCCGTGTCGTTAAACACACGCAGCATGGGGATAATGCCATTGGAGGAGC 1927 Query 107010 CATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCCAATA 107068 |||| || || || || || | || |||||| | | || || || |||||| Sbjct 1928 CATTCGTGCCGCGGAT-GTAGCTGTTGGTGGCTCGGATGTTGTGCATACTGATGCCAATA 1986 Query 107069 CCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATT 107128 || || |||||||| || || ||| || | | | || || | ||||| || | ||| Sbjct 1987 CCTCCCGCCCACTTGGATATGCACGCGCATTGCTTGAGCGTGTCGTAGATGCCCTCGATC 2046 Query 107129 GAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCA 107188 ||||| |||| | || | ||||| ||| |||| ||| || | ||| || || || Sbjct 2047 GAGTCATCCTGCATTGCCAATAGGAAACAAGAAGACAGCTGAGGACGTGGCGTGCCGGCG 2106 Query 107189 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCC 107248 |||||||| || || || ||||| |||| | ||| ||||| ||||| ||||| Sbjct 2107 TTGAAGAGAGTAGGGGTCGCGTGCGTGAAGAACTTTTGCGACATGAGCTCGTACGTCTCG 2166 Query 107249 AAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACAT 107301 | | | | ||||| | ||||||||| | ||||| |||| || ||| Sbjct 2167 AGCGCGGCCTGGATGTCGCTCTTGTGGATGCCCAGCGCCACGCGCAGAATCAT 2219 >seq6779 Length=4860 Score = 147 bits (162), Expect = 3e-30 Identities = 385/578 (67%), Gaps = 16/578 (3%) Strand=Plus/Plus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || || || |||||||| |||||||| ||||| || | || || | ||||| Sbjct 379 ATACTCGCCCACACGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGTGAGATCATGTCCAT 438 Query 117045 AAAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACG 117104 |||| || || |||||| |||| | || | ||| | | | | || ||||| Sbjct 439 CCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACACACTCAGTGAGTATAGTAGACG 498 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT-AC 117163 ||||| |||| |||||||||| | |||| | | |||||||||||||| || | || Sbjct 499 ATCCGCCACAAACTCAATGTATTGACACATGAGCGCTGAGTTCATACCGATAAGCTCCAC 558 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 | || || | ||| | | |||| | | ||||||| | || || || | ||| ||| Sbjct 559 A-GGCAGCGAGTCGCACACGAACTCGTGCTCAATCACCACAGCATCGCGAATGATCTCGT 617 Query 117224 GGATAGT----TTCGGTAGTGGGTCTATTA-CGCAAAGT-CTTGAAGAGCTCCACGGCAA 117277 ||| | | ||||| || | || | ||| | | ||| |||| || Sbjct 618 GGACACGGCTCTCCGGTATCTTGTTAACTAGCTTCGAGTACATTAAG-----CACGCGAA 672 Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337 | ||| ||| | |||||||| || || | || |||||||||| || || |||| Sbjct 673 A-TCCGTGTGCATGCCCTCATCACGACTGATCATCTCGTTTGAGAAGCTCAGACCAGGCA 731 Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397 | ||||| |||||||| | ||| ||| | || |||||||| || ||||||||||| | Sbjct 732 TAAGACCGCGCTTCTTAAGCCAGAAAACGGAACAAAATGACCCCGAAAAGAAGATACCTT 791 Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGAC-TTTGTGTCAAACCAT 117456 |||| || ||||| | || ||||| ||| | || ||| || | |||| ||||| Sbjct 792 CCACTGCAGCGAACGCTAGCAGACGCTCTGCGTACGA-CGACACACGCGGGTCACACCAT 850 Query 117457 TTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAAC 117516 || | ||||| || |||||||||| | |||||| | ||| | ||| || | || Sbjct 851 TTTAGCGCCCAGTTGGCCTTCTTCTGGACACATGGGATAGTCTCGATAGCACGTAGCAAG 910 Query 117517 TGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 117554 || | || || | ||||| |||||| ||||||| Sbjct 911 TGGTCTTTCTCCACGGCGTCCTTGATGTATGTGTCAAT 948 >seq5234 Length=8456 Score = 87.8 bits (96), Expect = 2e-12 Identities = 193/284 (68%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 ||| || ||| ||| | |||||| || || || || || || ||||||| || || Sbjct 5505 GGCGAAGTCCGTGTGCATACCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGTCC 5446 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 |||||||| || |||||||| | ||| | || | |||||| || || ||||||||||| Sbjct 5445 AGGCATGAGGCCACGCTTCTTAAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAGAT 5386 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGAC-TTTGTGTCAA 117451 ||||| || ||||| || | || ||||| | | ||||| || || | ||| Sbjct 5385 GCCCTCAACGGCAGCAAAAGCCAGTAGACGCTCCGGGTAGGAG-GACACACGAGGGTCGC 5327 Query 117452 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAA 117511 |||| || | ||||| | || |||||| | || || | || | || || | Sbjct 5326 ACCACTTGAGCGCCCAGTGTGCTTTCTTCGTGACGCACGGAATGGTCTCAATCGCACGCA 5267 Query 117512 ATAACTGCTTCTTTTCAGATC-CATCCTTAATGTATTTGTCAAT 117554 | | || | ||| || |||| ||||||| ||||| ||||||| Sbjct 5266 ACAGATGATCCTTCTC-GATCGCATCCTTGATGTACGTGTCAAT 5224 >seq14574 Length=2826 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 2766 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 2707 Query 136224 CAGGTAGGAGCT 136235 | |||||||||| Sbjct 2706 CCGGTAGGAGCT 2695 >seq5172 Length=6496 Score = 86.0 bits (94), Expect = 7e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || || || |||||||| |||||||| ||||| || | || || | ||||| Sbjct 5826 ATACTCGCCCACACGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGTGAGATCATGTCCAT 5885 Query 117045 AAAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACG 117104 |||| || || |||||| |||| | || | ||| || | | | || ||||| Sbjct 5886 CCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACACACCCAGTGAGTATAGTAGACG 5945 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGAT-TAC 117163 |||| |||| |||||||||||| |||| | | |||||||||||||| || | || Sbjct 5946 GTCCGCCACAAACTCAATGTACTGACACATGAGCGCTGAGTTCATACCGATAAGCTCCAC 6005 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTC 117209 | || || | ||| | | |||| | | ||||||| | || || || Sbjct 6006 A-GGCAGCGAGTCGCATACGAACTCGTGCTCAATCACCACAGCGTC 6050 >seq10590 Length=17674 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 169326 AGCTGTGCCACTGAAGCGTCGCGGACATTCTTACACTTCCCACGGAGAGGAAAGACGCCA 169385 || ||||| || | || || || || ||| | || ||||| ||||| ||||| || Sbjct 10478 AGTTGTGCGACCGTGGCATCACGCACGTTCAAAAGTTTGCCACGCAGAGGGAAGACACCG 10419 Query 169386 TAGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCGCTGAATCACCC 169445 || || |||||||||||||| | || || || || ||||| | ||||||||||||||| Sbjct 10418 TACTGGTCACGTCCAACGACTGCCAGTCCAGCCACTGCAAGAGCCTTCGCTGAATCACCC 10359 Query 169446 TCCGT 169450 || || Sbjct 10358 TCTGT 10354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589865997111080