Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq7195 168 1e-36 seq7887 141 2e-28 seq5421 138 3e-27 seq10576 109 1e-18 >seq7195 Length=47515 Score = 168 bits (186), Expect = 1e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || ||| ||||||||||| ||||| || || || ||||| ||| || || | || || Sbjct 44569 CAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTC 44510 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || ||||||||||| |||||||| || || || ||||| || || |||||||| ||||| Sbjct 44509 CTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 44450 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || |||||||| ||||| || || | ||||||| ||||| || ||||||| ||| Sbjct 44449 CTGGATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGGGTAATCGT 44390 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || |||||||| || ||||| | ||||| Sbjct 44389 CTTGCCCGTCAAAGTCTTGACGAAAATCTGCAT 44357 Score = 163 bits (180), Expect = 6e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || ||| ||||||||||| ||||| || || || ||||| ||| || || | || || Sbjct 44797 CAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTC 44738 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || ||||||||||| |||||||| || || || ||||| || || |||||||| ||||| Sbjct 44737 CTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 44678 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || |||||||| ||||| || || | ||||||| ||||| || ||||||| ||| Sbjct 44677 CTGGATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGGGTAATCGT 44618 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || ||||| || || ||||| | ||||| Sbjct 44617 CTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 44585 >seq7887 Length=10481 Score = 141 bits (156), Expect = 2e-28 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || ||||| || || || ||||| || | ||||| | || || ||| Sbjct 1207 ACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTCCTCG 1148 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 1147 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 1088 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| |||||||| || |||||| ||||||| ||||| || || || | ||||| Sbjct 1087 ATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTG 1028 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || | || || ||||| | ||||||| Sbjct 1027 CCCGTAAGGGTCTTGACGAAAATCTGCATTT 997 >seq5421 Length=2020 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| ||| || || | ||||| || Sbjct 1123 ACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTCA 1064 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| || || ||||| || || |||||||| ||||| ||| Sbjct 1063 AGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGA 1004 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| ||||| || || | |||||| ||||| || || || | |||||| Sbjct 1003 ATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTG 944 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 943 CCCGTTAGCGTCTTCACGAAGATCTGCAT 915 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| ||| || || | ||||| || Sbjct 1351 ACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTCA 1292 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| || || ||||| || || |||||||| ||||| ||| Sbjct 1291 AGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGA 1232 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| ||||| || || | |||||| ||||| || || || | |||||| Sbjct 1231 ATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTG 1172 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 1171 CCCGTCAGCGTCTTCACAAAGATCTGCAT 1143 >seq10576 Length=3682 Score = 109 bits (120), Expect = 1e-18 Identities = 188/273 (69%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 |||||||| ||||| | ||||| ||||||||||||||| | | |||||| | ||| Sbjct 1742 TTCTACGCGCTCTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAGGCCAATGGTAAGTGG 1683 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 || || |||||||| || ||||| ||||| || | || | || |||||| || Sbjct 1682 AGTCTATTCTGTCCTAACGAAGCTCCTGGTCTCTACGAGTGCTGGGGAGACGAGTTTGAA 1623 Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGAA 160768 | || ||||||| ||||| || || ||| | || ||| | | || ||||| | Sbjct 1622 GCGCTGTATGAAAAGTACGAGAAGGAAGGACGCGCTCGGAAGACCATTAACGCCCAGCAG 1563 Query 160769 CTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAG 160828 |||||| |||||| | ||| || ||||| ||| |||||||||| |||||| Sbjct 1562 CTGTGGTTCGCCATCCTGGACGCGCAGATCGAGACGGGAGTGCCCTTTATGCTCTACAAG 1503 Query 160829 GATGCCATCTGTCGCAAGAGTAACCAGAAGAAC 160861 || || | |||||| |||||| ||||| Sbjct 1502 GACGCAGCCAACCGCAAGTCGAACCAGCAGAAC 1470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109260311467889