Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq12351 179 3e-40 >seq12351 Length=7116 Score = 179 bits (198), Expect = 3e-40 Identities = 406/602 (67%), Gaps = 10/602 (2%) Strand=Plus/Minus Query 29790 GAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG 29849 |||||| ||| || ||||||||||| | || || ||||| ||||| || | ||| Sbjct 5281 GAGCTGCTTCTGAAGTGGTTCCACGTGGTTTAGATACACGTGCGCGTCACCGATAACGTG 5222 Query 29850 GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 29909 || ||||| || |||| || || || || || || | | ||| || || | ||| Sbjct 5221 GATGAACTCGCCAGGTTTCAGTCCAGTCACTTGCGCAACAAGCCGCGTCAGCAGCGCGTA 5162 Query 29910 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969 |||||||||||| || || || || || |||||||| |||| | |||||| | ||| || Sbjct 5161 GCTGGCGATGTTGAATGGCACGCCAAGTCCCATGTCGGCCGAACGCTGGTACATCTGGCA 5102 Query 29970 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 ||| | || |||||| |||||| ||||| || | ||||||| || || || ||||| Sbjct 5101 CGATAATTCCCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCAAGGTGGCAGTGCCAT 5042 Query 30030 GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGTTGT 30088 | | || |||||||| || ||| || || || | ||| || | | || Sbjct 5041 CTCGTTGAGATCAGCCGGGTTCCACGCCGACAGGACAATCCGTCGGTCAGTCGGATTCGT 4982 Query 30089 TC-CTG-ATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTG 30145 | | | || | ||| | || || || |||||||| || | |||||| | Sbjct 4981 ACGCAGCTTGTGAATCAC----CTCCGCAAGTTGGTCCACCCCTTGGCCAGTGTAGTCCG 4926 Query 30146 CCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCA 30205 | |||||||||||||| || || || || | ||||||||| ||||| |||||||| | Sbjct 4925 CATGCATGTCCGTGTACTTGGCACCAAAGTGACGCCACTGGAAGCCGTAAACCGGTCCAA 4866 Query 30206 GGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30265 |||| || |||||| | | | || | | ||||| | || | || || ||| Sbjct 4865 GGTCCCCAACTTCCCGATTCGGCAGTCCTCGACTATCCAAGTACTCGCGCGATCCATTGC 4806 Query 30266 CGTCCCAGATCTTTACCCCCTTCT-CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACG 30324 |||||||||| | | | |||| | | | | | || | | ||| || |||| | Sbjct 4805 CGTCCCAGATGTGGATATCTTTCTGCTGCAACGTGTCTGCA-CTCGTGTCGCCACTGATG 4747 Query 30325 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGA 30384 |||||||| |||||||| | || | ||| ||||||||||||||||| || || ||| Sbjct 4746 AACCACAGTAGCTCCTCGGCCACACCTCGCCAGAAGACCCTCTTGGTCGTCAGCAGTGGA 4687 Query 30385 AA 30386 || Sbjct 4686 AA 4685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408540075919691