Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq7195 113 3e-20 seq5421 93.3 3e-14 seq7887 87.8 1e-12 >seq7195 Length=47515 Score = 113 bits (124), Expect = 3e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||| || || || ||| || || || ||||| || || | ||| Sbjct 44574 AGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGA 44515 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| ||||||||| || || ||||| ||||| || || | || | ||| ||| Sbjct 44514 CCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCC 44455 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||||| || || | | || || || | |||||| |||| ||| Sbjct 44454 TTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGGGTA 44395 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||||| || ||||||||||| || || |||||||||||| || Sbjct 44394 ATCGTCTTGCCCGTCAAAGTCTTGACGAAAATCTGCATCTTG 44353 >seq5421 Length=2020 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||| || ||||| ||| || || || ||||||||| || | || Sbjct 904 AGACGCAGTACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAATCACTCAGTGTGCGG 845 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || || || ||||| ||||| || || | || | ||| ||| Sbjct 844 CCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCC 785 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || || | | || || |||| |||||| || | ||| Sbjct 784 TTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTG 725 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| || ||||| | || || || |||||||||||| Sbjct 724 ATCGTCTTGCCCGTTAGCGTCTTCACGAAAATCTGCATC 686 >seq7887 Length=10481 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||| | || || || ||| || || || ||||| || || ||| | || Sbjct 1216 AGACGCAGCACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGG 1157 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || ||||| ||||| || || | || | ||||||| Sbjct 1156 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCC 1097 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || || || ||| | | || |||| |||||| || | ||| Sbjct 1096 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTG 1037 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| | || || || ||||||||||| Sbjct 1036 ATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380865327447141