Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq10576 293 4e-74 seq5234 214 3e-50 seq6779 179 7e-40 >seq10576 Length=3682 Score = 293 bits (324), Expect = 4e-74 Identities = 919/1402 (66%), Gaps = 61/1402 (4%) Strand=Plus/Plus Query 212595 TAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTC 212654 ||||||||||||||||| || ||||| |||| ||| | |||||| | |||||||| Sbjct 514 TAGTACATGCCGGTCTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGAGTTT- 572 Query 212655 TTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGG 212714 ||| | || || ||||| | |||| | |||||| |||||||||||| Sbjct 573 ----GCTGA-TAGTCGGGTCAGCGATGTGG---------ATGTTCAGAGACTGACTCTGG 618 Query 212715 TCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCAC 212774 ||| | | | | | |||||| | || || | | | |||| || ||||||| Sbjct 619 CAGATGTAAGCGCCACGGTCAGCCGACAGATCCAGCACGGCCTTCTGTTTGATCTCCCAC 678 Query 212775 ACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCC 212834 || || ||| | | || |||| || ||||| | | | || ||||||||||| || Sbjct 679 ACAGTTTTGTACTTGTCCTTGACGTGGTCTGGAATGGCCTTGACCTTCTGCACAGATCCA 738 Query 212835 CTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGT-TCCAGAGGCCCCTGGTCTCCAGGCA 212893 | || | | ||| || | || | || |||||| ||| | || | || Sbjct 739 CCGTCATTTAGAATCTGATTACGTACTTC-TGGTGTCCAGATTCCCA-GCTCAATAAGCT 796 Query 212894 C-TTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAA 212952 | || | ||||| |||||| ||| || || || | ||||| | | | ||| | Sbjct 797 CCTTCATCAGGTACTTGTTGACGATCGTAAACTCGCCGGCCAGCACACGGCGGTTGTACA 856 Query 212953 AGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTG 213012 ||| || ||||| ||||||||| ||| ||||| ||||| ||||| || ||| || | Sbjct 857 TGTTGGACGTGTAAGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCTGTGGACGCCG 916 Query 213013 TGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAA 213072 | ||||| || || ||||| || ||| | | |||| | | | | | | Sbjct 917 TCGGCATCGGTGCAACCAGCAGTGAGTTGCGAAGACCGTATTTGATTACGTCATCCTTGA 976 Query 213073 GCTCTGCCCAGTCCCATCTGCCAGA--CAGGTCCTCGTCCTTCACGTTCCACATGTCAAA 213130 | | ||||||| ||| ||||| ||||| | ||| ||||||||| || Sbjct 977 GTGCCGCCCAGTTCCAGAGTCCAGATGCAGGTG--------TGACGCCCCACATGTCGAA 1028 Query 213131 CTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTT 213190 ||| |||| ||| || || | ||| ||||||| | | ||| || || ||||| Sbjct 1029 CTGGAAGACGCCCTTACTGGCAGGGGAGCCCTGGAACGTCTCGTACGGACCCAATTCCTT 1088 Query 213191 GGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTT 213250 ||| | ||| ||||| || || || ||||||||||| || || || || | | |||| Sbjct 1089 GGCGATCTCCATGGACGTCTCCATTGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTT 1148 Query 213251 GAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCAT-CATGCGTTGGAACACATCAGCCA 213309 ||||| | || | | | ||| | ||| | |||| | |||| ||||||||| Sbjct 1149 GAGCTCACTAGCTTGCTTGCTCTCGAACG-CATAGTTCATGAGGATGAACGCATCAGCCA 1207 Query 213310 GCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCC 213368 | |||||||| || || || ||||| | || | || ||| ||||| |||| ||| | Sbjct 1208 GACCCTGGACGCCAATACCAATGGGGCGATGACGCATGTTGGACTTCCGAGC-CTCTGCT 1266 Query 213369 AAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACA 213428 | || || ||||| ||| |||| ||||||||||||||| ||| ||| ||| || Sbjct 1267 ACAGGATAGTAGTTGACGTCAATGACCTTGTTGAGGTTGCGAGTGATCACCTTGACCACT 1326 Query 213429 TGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCG 213488 | ||| | || || | ||||||| ||| ||||| || |||| ||||| || Sbjct 1327 TCATACAGTTTCTGGTAGTCGAACACG---CCCTCGTCC---ACGAACTTGGGCAGCGCC 1380 Query 213489 ATGCTGGCCAGGTTGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGT 213547 | |||| |||||| || |||||||| | | | | | ||||||||||| | |||| Sbjct 1381 ACAGACGCCAAGTTGCACACTGCCACCTCATCGGGCGAC-GTGTACTCCATCACCTCGCA 1439 Query 213548 GCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGA 213607 ||| | ||||||| | ||||| |||||||||||||| ||||| ||||| |||||| | Sbjct 1440 GCATAAGTTGCTGGAGCGGATCGTGCCCAGGTTCTGCTGGTTCGACTTGCGGTTGGCTGC 1499 Query 213608 ATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCA 213667 |||||||||||||| |||| || ||||| | ||| | |||| || | ||| Sbjct 1500 GTCCTTGTAGAGCATAAAGGGCACTCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA 1559 Query 213668 GAGGTACCTGGCCTTGACCACCCGCCTGACAGC-TCCGGGCGTAGCCTCGTACTGTTCGT 213726 || | | ||| || | | || || || ||| | | |||||||| ||| | Sbjct 1560 CAGCTGCTGGGCGTTAATGGTCTTCC-GAGCGCGTCCTTCCTT---CTCGTACTTTTCAT 1615 Query 213727 AGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCG---GGAC 213783 | ||| | | || |||| |||||| | || || || ||| | | || |||| Sbjct 1616 ACAGCGCTTCAAACTCGTCTCCCCAGCACTCGTAGAGACCAGGA---GCTTCGTTAGGAC 1672 Query 213784 ACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACA 213843 | | || ||||| | || | | ||||||| |||||| || || || ||||| | Sbjct 1673 AGAATAGACTCCACTTACCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCAGA 1732 Query 213844 GCGCGGTGAACAGGTCCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCGCAGAT 213900 ||||| ||||| ||| | | | | ||||| || ||| |||||||||| Sbjct 1733 GCGCGTAGAACAAGTCACGAGCGCGGTGCAGCTCGT---TGCCGTGGTTCTTGCGCAGAT 1789 Query 213901 CTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCC 213960 | || || || || | ||| |||||||| ||||||| ||||| ||||||| || | Sbjct 1790 CCAGGAACTCGAACACGTCTGCGTGCCATGGCTCCAAATAGATAGCAAAGGATCCTTTGC 1849 Query 213961 TCTT---GCCGCCCTGGTCCAC 213979 ||| |||||||||||||| Sbjct 1850 GCTTACCTCCGCCCTGGTCCAC 1871 >seq5234 Length=8456 Score = 214 bits (236), Expect = 3e-50 Identities = 553/838 (66%), Gaps = 11/838 (1%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| | ||||| | ||||| Sbjct 5793 GTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCAT 5734 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| | || || | | | || || | | | |||||| | Sbjct 5733 CCAGTCGAAAGGGTTCTTGGCGTGGTAGATCTTGGACACACCAAGCGAGTACAGCAGACG 5674 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||| ||||| | |||||||| ||||||||| || || ||| Sbjct 5673 GTCAGCAACGAACTCAATGTACTGGCACATGAGGCCCGAGTTCATGCCAATCAGCTCCAC 5614 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 |||| | | | ||||| | ||| ||| ||| || || | | |||| | Sbjct 5613 CGGCAGCGAGTCACGCACGAACTCGTGCTCAATCACCACCGCGTCACGAATGATCTCGTG 5554 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 |||||| ||| | | || || ||| ||||| || || | |||||| ||||| Sbjct 5553 CACGCGGCTCTCCGGCAGCTTAGTGACCAG---CTTGGAGTACAGGAGGCAGGCGAAGTC 5497 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | |||||| || ||||| || ||||||||| |||| ||||||| ||| |||||||||| Sbjct 5496 CGTGTGCATACCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGTCCAGGCATGAG 5437 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || || |||||||| || | ||| || || ||||||||||||||||| || Sbjct 5436 GCCACGCTTCTTAAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAGATGCCCTCAAC 5377 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGAGATCCAGGAAA 48320 || || || || || | ||| | | || | | | | | | ||| | Sbjct 5376 GGCAGCAAAAGCCAGTAGACGCTCCGGGTAGGAGGACACACGAGGGT-CGCACCACTTGA 5318 Query 48321 GCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCT 48380 ||||||||| ||| |||||| ||| ||| || || ||||| || || || || || | | Sbjct 5317 GCGCCCAGTGTGCTTTCTTCGTGACGCACGGAATGGTCTCAATCGCACGCAACAGATGAT 5258 Query 48381 TGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGT 48437 ||| || ||| | || || | ||||||| || ||| | ||| |||| Sbjct 5257 CCTTCTCGATCGCATCCTTGATGTACGTGTCAATGAGCAG---TGAGTAGACCTCCGAGT 5201 Query 48438 GCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTT 48497 | | ||||| || ||||||||||| ||||||||| | |||||| ||||||||||| Sbjct 5200 GGATGTTCTCGATGGCGATCTGGAATCCGTAGAAGCATCGAGCCTCAGGCACCTGCACTT 5141 Query 48498 CTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGG 48557 | | ||| || || ||||| || || || || || || || ||||||| Sbjct 5140 CATTACTGAAGTTCATGGCCAAGTTCTCGTTCACGATTCCGTCGCTGGCTGCGAAGAAGG 5081 Query 48558 CAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGT 48617 | || || || || | ||| ||||||||||||| || || |||| ||| | || Sbjct 5080 CGAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTAAGCTTGGTCCAATCCTTGAGGT 5021 Query 48618 CTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 | | ||||||| | || || ||||||||||||| || || || |||||||| Sbjct 5020 CGTGCACCAGGTCGATCTCCTCAGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACAT 4963 >seq6779 Length=4860 Score = 179 bits (198), Expect = 7e-40 Identities = 550/840 (65%), Gaps = 17/840 (2%) Strand=Plus/Plus Query 47843 TAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATG 47902 || || ||||| | ||||| |||||||||||||| |||| || ||||| | ||||| Sbjct 380 TACTCGCCCACACGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGTGAGATCATGTCCATC 439 Query 47903 AAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTGA 47962 || ||| ||||| ||| || | | | || | || | || || || Sbjct 440 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACACACTCAGTGAGTATAGTAGACGA 499 Query 47963 TCCGCGACGTACTCGATGTATTTTGACATGAGGG-TGATGTTCATGCCTATGAGGGACAC 48021 ||||| || |||| ||||||| ||||||| | ||| |||||| || || || ||| Sbjct 500 TCCGCCACAAACTCAATGTATTGACACATGAGCGCTGA-GTTCATACCGATAAGCTCCAC 558 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 |||| | | | ||||| | ||| ||| ||| || || | | |||| | Sbjct 559 AGGCAGCGAGTCGCACACGAACTCGTGCTCAATCACCACAGCATCGCGAATGATCTCGTG 618 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 || ||| ||| | || | ||| | |||| | || | | ||| || || || Sbjct 619 GACACGGCTCTCCG---GTATCTTGTTAACTAGCTTCGAGTACATTAAGCACGCGAAATC 675 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | |||||| ||| || || || ||||| | | |||| ||||||| ||||||||||| | Sbjct 676 CGTGTGCATGCCCTCATCACGACTGATCATCTCGTTTGAGAAGCTCAGACCAGGCATAAG 735 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || || |||||||||| | || || || || |||||||| || ||||| Sbjct 736 ACCGCGCTTCTTAAGCCAGAAAACGGAACAAAATGACCCCGAAAAGAAGATACCTTCCAC 795 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGAGATCCAGGAAA 48320 ||| |||||||| || | |||| || | || | | | | | | | ||| | Sbjct 796 TGCAGCGAACGCTAGCAGACGCTCTGCGTACGACGACACACGCGGGTCACA-CCATTTTA 854 Query 48321 GCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCT--T 48378 ||||||||| |||||||||| || ||||| || ||||| || || || | | | | Sbjct 855 GCGCCCAGTTGGCCTTCTTCTGGACACATGGGATAGTCTCGATAGCACGTAGCAAGTGGT 914 Query 48379 CTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGA 48435 ||| | | ||| |||||| | || || | | |||||| | |||| ||| || Sbjct 915 CTTTCTC-CACG-GCGTCCTTGATGTATGTGTCAATAAGCAGC---GAATACACCTCCGA 969 Query 48436 GTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCAC 48495 ||| | |||||| |||||||||||||| ||||||||| | || || | |||||| Sbjct 970 GTGGATATTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGAGCTTCCGGTATCTGCAC 1029 Query 48496 TTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAA 48555 ||| | ||| || ||| ||||| ||||| || || || |||||| ||||| Sbjct 1030 TTCATTACTGAAGTTCATGGCCAGGTTCTCGTTGACGATACCGTCACTAGCAGCGAAGAA 1089 Query 48556 GGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTAC 48615 || || || | || | ||| || |||||||||| ||||| |||| | | | Sbjct 1090 CGCCAGAACGTACTTGATGAAGTGACGCTCGTTGTCTGTGAGTTTTGCCCAGTCGTTGAG 1149 Query 48616 GTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 || | |||| |||| || || | ||||||||||| || || || |||||||| Sbjct 1150 ATCGTGCACCAGRTCCAGCTCCTCGGCCGTCCAGAAGGAGGCCTCCGCCTTCTTGTACAT 1209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931351535361280