Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq5234 201 2e-46 seq10576 161 2e-34 seq6779 158 2e-33 >seq5234 Length=8456 Score = 201 bits (222), Expect = 2e-46 Identities = 554/845 (66%), Gaps = 15/845 (2%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | ||| |||||| || || ||||| || |||| Sbjct 4957 TGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATCGACCTGGTG 5016 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| | | | ||| | || | | |||||| || || ||||| ||||| Sbjct 5017 CACGACCTCAAGGATTGGACCAAGCTTACGGACAACGAGCGCCACTTCATCAAGCACGTG 5076 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 | || ||||| |||||| || || || ||||||||||| || | || |||| Sbjct 5077 CTCGCCTTCTTCGCAGCCAGCGACGGAATCGTGAACGAGAACTTGGCCATGAACTTCAGT 5136 Query 25660 AGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAA 25718 | |||||||| || | | ||||| || |||||||| |||||||| |||||||| || Sbjct 5137 AATGAAGTGCAGGTGCCT-GAGGCTCGATGCTTCTACGGATTCCAGATCGCCATCGAGAA 5195 Query 25719 TGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAGAG 25778 | ||||| ||||| || | ||| | |||||||| | || | ||||| Sbjct 5196 CATCCACTCGGAGGTCTACTCACTGCTCATTGACACGTACATCAAGGATGCGATCGAGAA 5255 Query 25779 AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGC 25838 |||| ||||| |||| || ||| ||| || || ||| || ||| || | ||||| Sbjct 5256 GGATCATCTGTTGCGTGCGATTGAGACCATTCCGTGCGTCACGAAGAAAGCACACTGGGC 5315 Query 25839 CATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTG 25897 | |||||| | || | | | | | | | ||||| || | || ||||||| Sbjct 5316 GCTCAAGTGGTGCGAC-CCTCGTGTGTCCTCCTACCCGGAGCGTCTACTGGCTTTTGCTG 5374 Query 25898 CTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAG 25956 | || ||||||||||| ||| ||||| || ||| ||||||||||||| ||| || Sbjct 5375 CCGTTGAGGGCATCTTCTTCTCGGGTTCCTTCTGC-TCCATCTTCTGGCTTAAGAAGCGT 5433 Query 25957 GGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCAC 26016 || |||||| || || ||| || |||||||||||||| | ||||||||| | ||| Sbjct 5434 GGCCTCATGCCTGGACTCAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGTATGCAC 5493 Query 26017 AGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGAC- 26075 | || || |||||||| || ||| | | | || | ||| || || | |||| | Sbjct 5494 ACGGACTTCGCCTGCCTCCTGTACTC---CAAGCTGGT-CACTAAGCTGCCGGAGAGCCG 5549 Query 26076 CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNN 26135 ||| || ||||| || || |||| ||| ||| | ||||| Sbjct 5550 CGTGCACGAGATCATTCGTGACGCGGTGGTGATTGAGCACGAGTTCGTGCGTGACTCGCT 5609 Query 26136 NNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGC 26195 | ||||||||| | |||||| |||| |||||||||| || || Sbjct 5610 GCCGGTGGAGCTGATTGGCATGAACTCGGGCCTCATGTGCCAGTACATTGAGTTCGTTGC 5669 Query 26196 CGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCC--TAACCCGTTC 26253 |||| |||||||| | ||| || | ||| ||||| ||||| ||||| ||| Sbjct 5670 TGACCGTCTGCTGTACTCGCTTGGTGTGTCCAAGATCTAC--CACGCCAAGAACCCTTTC 5727 Query 26254 GACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGC 26313 |||| ||||| | || || | | || |||||||||||||| || ||| | || ||| Sbjct 5728 GACTGGATGGACATGATCTCTCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGC 5787 Query 26314 GACTA 26318 || || Sbjct 5788 GAGTA 5792 >seq10576 Length=3682 Score = 161 bits (178), Expect = 2e-34 Identities = 429/654 (66%), Gaps = 25/654 (4%) Strand=Plus/Plus Query 221510 TCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCG-- 221567 || ||||| ||||| || || ||||| ||||| | || | | ||||||| | ||| Sbjct 1201 TCAGCCAGACCCTGGACGCCAATACCAATGGGGCGATGACGCATGTTGGA--CTTCCGAG 1258 Query 221568 CTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTT 221627 | |||| || ||||| |||||||||| || | ||||||||||| ||||||| || | Sbjct 1259 CCTCTGCTACAGGATAGTAGTTGACGTCAATGACCTTGTTGAGGTTGCGAGTGATCACCT 1318 Query 221628 TAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTT 221687 | ||||| || ||| ||||||| | |||||| ||| |||| Sbjct 1319 TGACCACTTCATACAGTTTCTGGTAGTCGAACAC---------GCCCTCGT--------- 1360 Query 221688 CCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGG 221747 |||| || | || || || |||| ||| ||||| |||||||| || | Sbjct 1361 CCACGAACTTGGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGCGACG 1420 Query 221748 TATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGAT 221807 | |||| || | ||| || | ||||||| | ||| || ||||||| | || | Sbjct 1421 TGTACTCCATCACCTCGCAGCATAAGTTGCTGGAGCGGATCGTGCCCAGGTTCTGCTGGT 1480 Query 221808 TAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAG 221867 | |||||||| ||||| ||||||||||||||||||||||| | || ||||| | ||| | Sbjct 1481 TCGACTTGCGGTTGGCTGCGTCCTTGTAGAGCATAAAGGGCACTCCCGTCTCGATCTGCG 1540 Query 221868 CCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGG 221927 | |||| || | ||| || | |||| | | ||| || || || ||| Sbjct 1541 CGTCCAGGATGGCGAACCACAGCTGCTGGGCGTTAATGGTCTTC-CGAGCGCGTCCT--T 1597 Query 221928 TCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTG 221987 ||| || ||| ||| ||| ||||||| || || | ||||| || || | Sbjct 1598 CCTTCTCGTACTTTTCATACAGCGCTTCAAACTCGTCTCCCCAGCACTCGTAGAGACCAG 1657 Query 221988 GACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGA 222047 || | ||||| | |||||||| | ||| | | || |||| |||||||| Sbjct 1658 GAGCTTCGTTAGGACAGAATAGACTCCACTTACCATTGGCCTCCACTCTCTTCATGAAGA 1717 Query 222048 GGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGT 222107 | || || | ||| ||||| | || | || | | || ||| ||| ||||| || Sbjct 1718 GATCAGGCACCCAGAGCGCGTAGAACAAGTCACGAGCGCGGTGCAGCTCGTTGCCGTGGT 1777 Query 222108 TTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGA 222161 | || | |||||||| ||||| || | ||| |||||||| ||||||| ||||| Sbjct 1778 TCTTGCGCAGATCCAGGAACTCGAACACGTCTGCGTGCCATGGCTCCAAATAGA 1831 Score = 95.1 bits (104), Expect = 2e-14 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 221096 AGCACCTTGACCATGTGCTTGTTCACCACTTGGAAA-TCTCCCGAGAGCACCCTCCTCTG 221154 ||| |||| | || || |||||| || | | | ||| || || | ||||| | | | Sbjct 793 AGCTCCTTCATCAGGTACTTGTTGACGA-TCGTAAACTCGCCGGCCAGCACACGGCGGTT 851 Query 221155 GTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCT 221214 ||||| ||| || ||| | || |||||| ||| |||||||||||||||||||| ||| Sbjct 852 GTACATGTTGGACGTGTAAGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCTGTGGA 911 Query 221215 GGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCGAAT 221260 || || ||||| ||||| |||||||| |||||| || ||| || Sbjct 912 CGCCGTCGGCATCGGTGCAACCAGCAGTGAGTTGCGAAGACCGTAT 957 >seq6779 Length=4860 Score = 158 bits (174), Expect = 2e-33 Identities = 545/848 (64%), Gaps = 19/848 (2%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | ||| |||||| ||||| ||| | || |||| Sbjct 1215 TGGCAGATGTACAAGAAGGCGGAGGCCTCCTTCTGGACGGCCGAGGAGCTGGAYCTGGTG 1156 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAG---ACGAGCAGCATTTTCTCAAGTAC 25596 | || | ||| |||| || | || || |||||| || || |||||||| Sbjct 1155 CACGATCTCAACGACTGG---GCAAAACTCACAGACAACGAGCGTCACTTCATCAAGTAC 1099 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || |||| ||||| || || ||| ||||| || |||||||| ||| | || ||| Sbjct 1098 GTTCTGGCGTTCTTCGCTGCTAGTGACGGTATCGTCAACGAGAACCTGGCCATGAACTTC 1039 Query 25657 ACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 | | ||||||||| ||| ||| || || |||||||| |||||||| || ||||| Sbjct 1038 AGTAATGAAGTGCAGATAC-CGGAAGCTCGCTGCTTCTACGGCTTCCAGATCGCTATCGA 980 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775 ||| | ||||| ||||||||| | |||| | || ||||| | |||| || || Sbjct 979 GAATATCCACTCGGAGGTGTATTCGCTGCTTATTGACACATACATCAAGGACGCCGTGGA 920 Query 25776 GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTG 25835 || ||| | || | |||| |||||| || || | || ||| |||||| || Sbjct 919 GAAAGACCACTTGCTACGTGCTATCGAGACTATCCCATGTGTCCAGAAGAAGGCCAACTG 860 Query 25836 GGCCATGAAGTGG-ATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 ||| | || ||| | | | || | | | ||| | ||||| ||| |||| || | Sbjct 859 GGCGCTAAAATGGTGTGACCCGCGTGTG-TCGTCGTACGCAGAGCGTCTGCTAGCGTTCG 801 Query 25895 CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGA 25954 |||| ||||| || ||||| || || || ||| || | |||||||| ||| || Sbjct 800 CTGCAGTGGAAGGTATCTTCTTTTCGGGGTCATTTTGTTCCGTTTTCTGGCTTAAGAAGC 741 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 || ||||| || ||| ||| || |||||| | ||||| | || ||||| | | Sbjct 740 GCGGTCTTATGCCTGGTCTGAGCTTCTCAAACGAGATGATCAGTCGTGATGAGGGCATGC 681 Query 26015 ACAGAGATTTTGCCTGCCTGCTCTACACG-GGCCACTTGCTCCACAAACCTTCTCAAGAG 26073 ||| ||||| || ||| | | ||| || || | || | || | | |||| Sbjct 680 ACACGGATTTCGCGTGCTTAATGTACTCGAAGCTAGTT-----AACAAGATACCGGAGAG 626 Query 26074 AC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNN 26132 | ||| || ||||| || ||||||| ||| ||| | ||||| Sbjct 625 CCGTGTCCACGAGATCATTCGCGATGCTGTGGTGATTGAGCACGAGTTCGTGTGCGACTC 566 Query 26133 NNNNNNNNNNNNNNNNNTGGGCATGAACAACAG-ACTCATGAGCCAATACATTGAGTATG 26191 | || |||||| ||| |||||| | ||||||||||||| || Sbjct 565 GCTGCCTGTGGAGCTTATCGGTATGAAC-TCAGCGCTCATGTGTCAATACATTGAGTTTG 507 Query 26192 TGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGT 26251 |||| || | ||| || | | ||| | | ||| |||||| | ||||||| Sbjct 506 TGGCGGATCGTCTACTATACTCACTGAGTGTGTCCAAGATCTACAACGTGAAGAACCCGT 447 Query 26252 TCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCG 26311 |||||| ||||| | || || || | || ||||| |||||||| || ||| | || | Sbjct 446 TCGACTGGATGGACATGATCTCACTGCAGGGCAAGACAAACTTCTTCGAGAAGCGTGTGG 387 Query 26312 GCGACTAT 26319 |||| ||| Sbjct 386 GCGAGTAT 379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928664058412480