Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq10576 163 3e-35 seq6779 147 3e-30 seq5234 87.8 2e-12 seq5172 86.0 7e-12 seq10590 82.4 9e-11 >seq10576 Length=3682 Score = 163 bits (180), Expect = 3e-35 Identities = 424/638 (66%), Gaps = 9/638 (1%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| | ||| | |||| || || | ||||||||| | ||||| | | | Sbjct 2228 CCGCAGCAGATGATTCTGCGCGTGGCGCTGGGCATCCACAAGAGCGACATCCAGGCCGCG 2169 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| ||||| ||||| ||| | |||| ||||| || || || |||||| Sbjct 2168 CTCGAGACGTACGAGCTCATGTCGCAAAAGTTCTTCACGCACGCGACCCCTACTCTCTTC 2109 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || || || ||| | || ||| |||| ||| ||||| | || | |||| ||| Sbjct 2108 AACGCCGGCACGCCACGTCCTCAGCTGTCTTCTTGTTTCCTATTGGCAATGCAGGATGAC 2049 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || ||| | || ||||| | || || | | | || ||| || || |||||||| || Sbjct 2048 TCGATCGAGGGCATCTACGACACGCTCAAGCAATGCGCGTGCATATCCAAGTGGGCGGGA 1989 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAAA 75510 |||||||| || || || | | |||||| || | || || || || || || Sbjct 1988 GGTATTGGCATCAGTATGCACAACATCCGAGCCACCAACAGCTAC-ATCCGCGGCACGAA 1930 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 ||| || |||| ||||| || ||||| || || ||||||| ||| || |||||||| Sbjct 1929 TGGCTCCTCCAATGGCATTATCCCCATGCTGCGTGTGTTTAACGACACGGCTCGCTATGT 1870 Query 75571 AAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGC 75627 | || | || || ||||| || ||| | || |||| ||||| |||||||| || Sbjct 1869 GGACCAGGGCGGAGGTAAGCGCAAAGGATCCTTTGCTATCTATTTGGAGCCATGGCACGC 1810 Query 75628 CGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG-TA 75686 || | | |||||||| || | || ||||| || |||| | || | | | | Sbjct 1809 AGACGTGTTCGAGTTCCTGGATCTGCGCAAGAACCACGGCAACGA-GCTGCACCGCGCTC 1751 Query 75687 GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTG 75746 | || | || | | || ||| | || || || ||||||||| | || |||| || Sbjct 1750 GTGACTTGTTCTACGCGCTCTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAGGCCAATG 1691 Query 75747 GTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGAG 75805 || | ||| ||| |||||||| || | || || ||||||| ||| || | ||| || Sbjct 1690 GTAAGTGGAGTCTATTCTGTCCTAACGAAGCTCCTGGTCTCTACGAGTGCTG-GGGAGAC 1632 Query 75806 GAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGG 75843 ||||||||||| || || |||||| || |||| || Sbjct 1631 GAGTTTGAAGCGCTGTATGAAAAGTACGAGAAGGAAGG 1594 >seq6779 Length=4860 Score = 147 bits (162), Expect = 3e-30 Identities = 385/578 (67%), Gaps = 16/578 (3%) Strand=Plus/Minus Query 64948 ATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACT 65007 ||||||| |||||| ||||| | || || | || || | || ||| | ||| Sbjct 948 ATTGACACATACATCAAGGACGCCGTGGAGAAAGACCACTTGCTACGTGCTATCGAGACT 889 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAA-GTCTCG 65066 | |||||| | |||||||||| || ||||| | ||||||| |||| | || ||| Sbjct 888 ATCCCATGTGTCCAGAAGAAGGCCAACTGGGCGCTAAAATGGTGTGACCCGCGTGTGTCG 829 Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 || | ||| ||||| || | ||||| || ||||| ||||||||||| || ||||| Sbjct 828 -TCGTACGCAGAGCGTCTGCTAGCGTTCGCTGCAGTGGAAGGTATCTTCTTTTCGGGGTC 770 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 ||| || | ||| ||| | |||||||| ||||| ||||| || || |||||||||| Sbjct 769 ATTTTGTTCCGTTTTCTGGCTTAAGAAGCGCGGTCTTATGCCTGGTCTGAGCTTCTCAAA 710 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAG-A 65245 || | || || |||||||| | ||| ||| ||| |||| ||| | | | Sbjct 709 CGAGATGATCAGTCGTGATGAGGGCATGCACACGGA-TTTCGCGTG-----CTTAATGTA 656 Query 65246 CTTTGCG-TAATAGACCCACTACCGAA----ACTATCCACGCCATCGTGAAAGAGGCGGT 65300 || | || | || ||||| | | |||||| ||| | || || || Sbjct 655 CTCGAAGCTAGTTAACAAGATACCGGAGAGCCGTGTCCACGAGATCATTCGCGATGCTGT 596 Query 65301 TGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGT-AATCTCATCGGTATGAACT 65359 | ||||||| | | |||| | | ||| | || || ||| | || ||||||||||||| Sbjct 595 GGTGATTGAGCACGAGTTCGTGTGCGACTCGCTGCC-TGTGGAGCTTATCGGTATGAACT 537 Query 65360 CTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGG 65419 | | | |||| | |||||||||| |||| |||||||||| || | | | | | Sbjct 536 CAGCGCTCATGTGTCAATACATTGAGTTTGTGGCGGATCGTCTACTATACTCACTGAGTG 477 Query 65420 TGCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATG 65479 || | || | |||| |||||| || || |||| ||||| | || || | | Sbjct 476 TGTCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGATCTCACTGCAGG 417 Query 65480 GGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTAT 65517 | ||||| |||||||| |||||||| || || || ||| Sbjct 416 GCAAGACAAACTTCTTCGAGAAGCGTGTGGGCGAGTAT 379 >seq5234 Length=8456 Score = 87.8 bits (96), Expect = 2e-12 Identities = 193/284 (68%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 64948 ATTGACAAATACATTAAGGATG-GATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAAC 65006 ||||||| ||||| ||||||| |||| || ||| | || | || || || | || Sbjct 5224 ATTGACACGTACATCAAGGATGCGATC-GAGAAGGATCATCTGTTGCGTGCGATTGAGAC 5282 Query 65007 TGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAA-GTCTC 65065 | || || | |||||| || | ||||| | || |||| ||| | || || Sbjct 5283 CATTCCGTGCGTCACGAAGAAAGCACACTGGGCGCTCAAGTGGTGCGACCCTCGTGTGTC 5342 Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 ||||| | | ||||| || | || ||||| || ||||| ||||||||||| || | Sbjct 5343 -CTCCTACCCGGAGCGTCTACTGGCTTTTGCTGCCGTTGAGGGCATCTTCTTCTCGGGTT 5401 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 | |||||| | || | ||| | |||||||| || |||||||| || || ||||||| | Sbjct 5402 CCTTCTGCTCCATCTTCTGGCTTAAGAAGCGTGGCCTCATGCCTGGACTCAGCTTCTCGA 5461 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 | || || || || || |||||| | ||| ||| || ||| Sbjct 5462 ACGAGCTCATCAGTCGTGACGAGGGTATGCACACGGACTTCGCC 5505 >seq5172 Length=6496 Score = 86.0 bits (94), Expect = 7e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 65293 GAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTA-ATCTCATCGG 65351 || || || | ||||||| | | |||| | | ||| | || || ||| | || ||||| Sbjct 6050 GACGCTGTGGTGATTGAGCACGAGTTCGTATGCGACTCGCTGCC-TGTGGAGCTTATCGG 5992 Query 65352 TATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACA 65411 ||||||||| | | |||| |||||||||||| |||| |||| ||||| || | Sbjct 5991 TATGAACTCAGCGCTCATGTGTCAGTACATTGAGTTTGTGGCGGACCGTCTACTATACTC 5932 Query 65412 AGTTGGGGTGCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAG 65471 | | || ||| | || | |||| |||||| || || |||| ||||| | || Sbjct 5931 ACTGGGTGTGTCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGATCTC 5872 Query 65472 CCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTAT 65517 || | || ||||| |||||||| |||||||| || || || ||| Sbjct 5871 ACTGCAGGGCAAGACAAACTTCTTCGAGAAGCGTGTGGGCGAGTAT 5826 >seq10590 Length=17674 Score = 82.4 bits (90), Expect = 9e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 13557 TTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGAAAGTGTACTCTCA 13616 |||||||| | || || |||||| ||| ||| | | || | |||| | || | Sbjct 10289 TTCCCAAGCTTGAGGATGCGAACCTGGCCGGTGGTCCTCGCTCAAGCGAGTGCTCGCTTA 10348 Query 13617 TTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTTGGTC 13676 | | |||||||||||||| || || | || || || || || || | |||||||| | Sbjct 10349 TATTGACAGAGGGTGATTCAGCGAAGGCTCTTGCAGTGGCTGGACTGGCAGTCGTTGGAC 10408 Query 13677 GTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTCGGGACGCTTCGG 13736 |||| || |||||||| ||||| || || || ||| | ||| || || || || ||| Sbjct 10409 GTGACCAGTACGGTGTCTTCCCTCTGCGTGGCAAACTTTTGAACGTGCGTGATGCCACGG 10468 Query 13737 TGGCACAGCT 13746 | ||||| || Sbjct 10469 TCGCACAACT 10478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596453515012960