Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq10517 114 4e-20 seq10337 105 2e-17 seq4547 93.3 1e-13 seq4752 87.8 5e-12 seq4627 87.8 5e-12 >seq10517 Length=10380 Score = 114 bits (126), Expect = 4e-20 Identities = 189/270 (70%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 ||||| ||||| | |||||||| || |||||||| | || || || |||||| Sbjct 6022 TCCATTGCCTTGACAAGTCGACGCTGGATGTAACCAGTCTCGGCCGTCTTCACGGCTGTA 5963 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 ||||||||||| |||||||||||||||| |||||||| | ||| | ||| ||| | || Sbjct 5962 TCAATTAGACCTTCACGACCACCCATAGCGTGGAAGAAAAACTCCTGCGG-CGTCAAACC 5904 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 | | | ||| | || || |||||||| |||||| ||| ||| | Sbjct 5903 CTTCAGGTACGAGTTTTCCACAAAACCACGACTCTCGGGGCCCAGGTCATCCTTCCCGTA 5844 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 ||| || || || | || | | ||||| ||||| |||||||| ||||||||||| || Sbjct 5843 GTGCGGTAGCGTACGGTGGTTGAAACCGTACGGGATTCGCTTTCCTTCAACGTTCTGTTG 5784 Query 302814 TCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||| || | || ||||| || ||||| Sbjct 5783 ACCCACACAAGCGATAATCTGGGAGATATT 5754 >seq10337 Length=9869 Score = 105 bits (116), Expect = 2e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || |||| |||||| |||||||| || || | ||| |||||||| |||||||| Sbjct 6166 CCGTGGGAGATCAGACAATCGCGCTCCATCTCTCCCATACGCAGACCACCTTCGCGAGCA 6225 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | ||| || |||||||| || || | || || || ||||| || | Sbjct 6226 CGACCTTCCATGGGCTGACGCGTCAGCATCGTCACGGGGCCACGAGAGCGCGAGTGGATC 6285 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || || | ||||||||||| |||||||||||||| | ||| ||||||||||| Sbjct 6286 TTGTCGTCGACCATATGCTTCAGACGCTGGTAGAACGTGGGTCCGATGAAGAT 6338 >seq4547 Length=6555 Score = 93.3 bits (102), Expect = 1e-13 Identities = 70/80 (88%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 410494 TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGAGTCCCGTCG 410553 || ||||||||||||||| |||||||| ||||||| ||||||||||||||||||| || Sbjct 3383 TGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGGTTCGAGTCCCG-CG 3325 Query 410554 T-GGGTAAtttttttaattt 410572 | | |||||||||| ||||| Sbjct 3324 TCGCGTAATTTTTTCAATTT 3305 >seq4752 Length=1614 Score = 87.8 bits (96), Expect = 5e-12 Identities = 66/75 (88%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 410494 TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGAGTCCCGTCG 410553 || ||||||||||||||| |||||||| ||||||| ||||||||||||||||||| || Sbjct 189 TGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGGTTCGAGTCCCG-CG 131 Query 410554 T-GGGTAAttttttt 410567 | | ||||||||||| Sbjct 130 TCGCGTAATTTTTTT 116 >seq4627 Length=5192 Score = 87.8 bits (96), Expect = 5e-12 Identities = 66/75 (88%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 410494 TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGAGTCCCGTCG 410553 || ||||||||||||||| |||||||| ||||||| ||||||||||||||||||| || Sbjct 2734 TGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGGTTCGAGTCCCG-CG 2792 Query 410554 T-GGGTAAttttttt 410567 | | ||||||||||| Sbjct 2793 TCGCGTAATTTTTTT 2807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471524042760079