Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq10576 98.7 9e-16 seq5421 96.9 3e-15 seq7195 95.1 1e-14 seq9710 87.8 2e-12 >seq10576 Length=3682 Score = 98.7 bits (108), Expect = 9e-16 Identities = 250/377 (66%), Gaps = 5/377 (1%) Strand=Plus/Plus Query 139492 AGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGT 139551 ||||| || || ||||| ||||||||||| |||| |||||| || | | ||||| || Sbjct 1792 AGGAACTCGAACACGTCTGCGTGCCATGGCTCCAAATAGATAGCAAAGGATCCTTTGCGC 1851 Query 139552 TTGCCACCT---TGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCC 139608 || || || || || || | || | | | || || || |||| ||| || Sbjct 1852 TTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAGCATGGGGATA 1911 Query 139609 AGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGT 139668 | || | | | || || |||| |||||| |||||| ||||||| || || Sbjct 1912 ATGCCATTGGAGGAGCCATTCGTGCCGCGGATGTAGCTGTTGGTGGCTCGGATGTTGTGC 1971 Query 139669 ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAAT-GTCTC 139727 | | ||||||| || || || | | |||||||| | |||| | || | | || || Sbjct 1972 ATACTGATGCCAATACCTCCCGCCCACTTGGATATGCACGCGCATT-GCTTGAGCGTGTC 2030 Query 139728 GTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGG 139787 ||| || || || ||| |||||||| | | || || || || || || || || Sbjct 2031 GTAGATGCCCTCGATCGAGTCATCCTGCATTGCCAATAGGAAACAAGAAGACAGCTGAGG 2090 Query 139788 TAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACAT 139847 || ||||||||| || |||||||| ||||||||||||| | | || |||||| Sbjct 2091 ACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTCGCGTGCGTGAAGAACTTTTGCGACAT 2150 Query 139848 CAATTCGTACGTTTCGA 139864 | |||||||| |||| Sbjct 2151 GAGCTCGTACGTCTCGA 2167 >seq5421 Length=2020 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || |||||||| || || || || |||||||| || || | | Sbjct 915 ATGCAGATCTTCGTGAAGACGCTAACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 974 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || ||||| || ||||| ||||| || || || || || Sbjct 975 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCGCCTGACCAG 1034 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || || ||||| |||||| | | || || || ||| Sbjct 1035 CAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACGCTGAGCGACTACAAC 1094 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| ||||| | || |||| || ||| Sbjct 1095 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGTCTGCGTGGTGGC 1142 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || |||||||| || || | | Sbjct 1143 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 1202 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || ||||| || ||||| ||||| || || || || || Sbjct 1203 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCGCCTGACCAG 1262 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || || ||||| |||||| | | || || || ||| Sbjct 1263 CAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACGCTGAGCGACTACAAC 1322 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| ||||| | || | ||||| || Sbjct 1323 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGTCTTCGCGGCGG 1369 >seq7195 Length=47515 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || ||||| || || || || | | Sbjct 44585 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAGACGATTACCCTGGACGTGGAGCCTTCG 44644 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||| ||||| ||||| || || || || || Sbjct 44645 GACTCGATCGACAACGTGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 44704 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || ||||||||||| | | || || || ||| Sbjct 44705 CAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 44764 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| |||| |||| |||| || || Sbjct 44765 ATCCAGAAGGAGTCTACTCTTCACCTGGTTCTGCGTCTGCGTGGCGG 44811 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || | || || || || ||||| || || || || | | Sbjct 44356 GATGCAGATTTTCGTCAAGACTTTGACGGGCAAGACGATTACCCTGGACGTGGAGCCTTC 44415 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || ||||||||||| ||||| ||||| || || || || || Sbjct 44416 GGACTCGATCGACAACGTGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCA 44475 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| || || || ||||||||||| | | || || || || Sbjct 44476 GCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 44535 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| || || || ||| |||| |||| |||| || ||| Sbjct 44536 CATCCAGAAGGAGTCTACTCTTCACCTGGTTCTGCGTCTGCGTGGTGGC 44584 >seq9710 Length=10376 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || ||||| || || || | || Sbjct 1053 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 994 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| || ||||| || || || || Sbjct 993 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGARGGAATCCCGCCTGACCAG 934 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||| ||||||| ||||| || ||||| ||||| Sbjct 933 CAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGA 899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449810055550760