Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq7195 132 3e-26 seq7887 129 4e-25 seq9710 122 6e-23 seq5421 118 7e-22 >seq7195 Length=47515 Score = 132 bits (146), Expect = 3e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 ||||| || | || | ||| |||||||||| || ||||||||| ||||| ||||| Sbjct 44814 TTTCCGCCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCG 44755 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || |||| | || ||||| ||||| || ||||||||||| || |||||||| || Sbjct 44754 CTCAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGC 44695 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || |||||||| | || ||||| || ||| | ||||| || | ||| Sbjct 44694 GGGATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCC 44635 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | ||| || ||||| ||||| | |||||| || |||||||||||| Sbjct 44634 ACGTCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCATG 44584 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||||| || ||||||||| ||||| ||||| || |||| | || Sbjct 44569 CAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTC 44510 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || ||||||||||| || |||||||| |||| | || |||||||| Sbjct 44509 CTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 44450 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || ||||| || ||| | ||||| || | ||| || || | ||| || || Sbjct 44449 CTGGATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGGGTAATCGT 44390 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| | ||||| || || |||||||| Sbjct 44389 CTTGCCCGTCAAAGTCTTGACGAAAATCTGCAT 44357 >seq7887 Length=10481 Score = 129 bits (142), Expect = 4e-25 Identities = 160/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || ||||| | ||| ||||||||| ||||| |||||||| || |||| | || Sbjct 1211 CAGCACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTC 1152 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 1151 CTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 1092 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | ||||| || ||||| || | || || || | ||| || || | || | Sbjct 1091 CTGGATTTTCTGCTTGAC--AT--TGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGA 1036 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| ||||| |||||||| || || |||||||| Sbjct 1035 TGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 999 >seq9710 Length=10376 Score = 122 bits (134), Expect = 6e-23 Identities = 146/197 (74%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || ||||| |||||||| || |||| | || || || ||||| |||||||||| Sbjct 864 CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 923 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| |||| | || |||||||| | ||||| || ||||| || Sbjct 924 TCAGACGCTGCTGGTCAGGCGGGATTCCYTCCTTGTCCTGGATTTTCTGCTTGAC--AT- 980 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || || | ||| || || | || |||||||| ||||| | |||||| Sbjct 981 -TGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTC 1039 Query 34964 ACAAAGATCTGCATGAT 34980 ||||||||||||||||| Sbjct 1040 ACAAAGATCTGCATGAT 1056 >seq5421 Length=2020 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||||||||| ||||| ||||| || |||| |||| Sbjct 1354 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCC 1295 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| || || |||||||| |||| | || |||||||| Sbjct 1294 TCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 1235 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || ||| | ||||| || | ||| || || | || || ||| Sbjct 1234 TGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTC 1175 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| || ||||| ||||||||||||||| Sbjct 1174 TTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 1142 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||||||||| ||||| ||||| || |||| |||| Sbjct 1126 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCC 1067 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| || || |||||||| |||| | || |||||||| Sbjct 1066 TCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 1007 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || ||| | ||||| || | ||| || || | || || ||| Sbjct 1006 TGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTC 947 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| || ||||| || |||||||||||| Sbjct 946 TTGCCCGTTAGCGTCTTCACGAAGATCTGCATG 914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325631008645973