Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq10576 109 1e-18 seq7195 109 1e-18 seq5421 102 2e-16 >seq10576 Length=3682 Score = 109 bits (120), Expect = 1e-18 Identities = 173/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166 ||||||||||||| || ||||||| || ||| || || ||| ||| | | Sbjct 1498 GCGTCCTTGTAGAGCATAAAGGGCACTCCCGTCTCGATCTGCGCGTCCAGGATGGCGAAC 1557 Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226 || || | ||||| || | ||| | | || | |||||| || ||||| | ||||| Sbjct 1558 CACAGCTGCTGGGCGTTAATGGTCTTCCGAGCGCGTCCTTCCTTCTCGTACTTTTCATAC 1617 Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286 || |||| || || | || | |||| ||||| |||||||| || ||||| || Sbjct 1618 AGCGCTTCAAACTCGTCTCCCCAGCACTCGTAGAGACCAGGAGCTTCGTTAGGACAGAAT 1677 Query 173287 AGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCG 173346 |||||||| || |||| || ||| || |||||||||||||| || | ||| | |||| Sbjct 1678 AGACTCCACTTACCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCAGAGCGCG 1737 Query 173347 TAGAACAA 173354 |||||||| Sbjct 1738 TAGAACAA 1745 >seq7195 Length=47515 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || ||||| || |||| ||||| ||| ||| Sbjct 44360 CAGATTTTCGTCAAGACTTTGACGGGCAAGACGATTACCCTGGACGTGGAGCCTTCGGAC 44419 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||||||||| || || || ||||| || ||| ||| || Sbjct 44420 TCGATCGACAACGTGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 44479 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || |||||| |||| || || | || || ||| |||||| || Sbjct 44480 CGTCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 44539 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||||||||||||||| ||| || | || || Sbjct 44540 CAGAAGGAGTCTACTCTTCACCTGGTTCTGCGTCTGCG 44577 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || ||||| || |||| ||||| ||| ||| Sbjct 44588 CAGATCTTCGTCAAGACCTTGACGGGCAAGACGATTACCCTGGACGTGGAGCCTTCGGAC 44647 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||||||||| || || || ||||| || ||| ||| || Sbjct 44648 TCGATCGACAACGTGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 44707 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || |||||| |||| || || | || || ||| |||||| || Sbjct 44708 CGTCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 44767 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||||||||||||||| ||| || | || || Sbjct 44768 CAGAAGGAGTCTACTCTTCACCTGGTTCTGCGTCTGCG 44805 >seq5421 Length=2020 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || ||||| || || || |||||||| | || ||||| || ||| Sbjct 1146 CAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCGGAC 1205 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| |||||||| || || ||||| || ||| ||| || Sbjct 1206 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 1265 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| || |||||| | || ||||| | || || ||| |||||| || Sbjct 1266 CGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACGCTGAGCGACTACAACATC 1325 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 1326 CAGAAGGAGTCCACGCTGCACCTGGT 1351 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || |||||||| | || ||||| || ||| | |||| Sbjct 930 AAGACGCTAACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCGGACTCGATCGACAAC 989 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| |||||||| || || ||||| || ||| ||| || | ||||||||| Sbjct 990 GTGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGCCTTATCTTC 1049 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || ||||| | || || ||| |||||| ||||||| ||||| Sbjct 1050 GCTGGCAAGCAGCTTGAGGATGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCC 1109 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 1110 ACGCTGCACCTGGT 1123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181585083256207