Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq10576 176 4e-39 seq7195 104 2e-17 seq5421 100 3e-16 seq7887 86.0 6e-12 >seq10576 Length=3682 Score = 176 bits (194), Expect = 4e-39 Identities = 979/1535 (64%), Gaps = 60/1535 (4%) Strand=Plus/Plus Query 146904 AAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTC 146963 ||||||||| ||||||||||| | | |||| ||| ||| ||||||| | ||||| Sbjct 825 AAACTCGCCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAAGGCTCGATGGACTC 884 Query 146964 ATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATT 147023 ||| ||||| | || || || |||| || || ||||| || |||| || ||| || Sbjct 885 ATTGTTGCCCAGGATCTGAGCTGTGGACGCCGTCGGCATCGGTGCAACCAGCAGTGAGTT 944 Query 147024 TCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACA-TC--GACGA 147080 || |||||||| | || ||||| | | ||||| ||| | || || | Sbjct 945 GCGAAGACCGTATTTGATTACGTCATCCTTGAGTGCCGCCCAGTTCCAGAGTCCAGATGC 1004 Query 147081 GGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAA 147140 || || ||| |||||||||| |||||| || || |||||| || ||| ||| Sbjct 1005 AGGTGTGACGCCCCACATGTCGAACTGGAAGACGCCCTTACTGGCAGGGGAGCCCTGGAA 1064 Query 147141 CGTAGTGTAGC-------TTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTC 147193 ||| ||| |||| | ||| | | ||| | || | ||| | || Sbjct 1065 CGTCTCGTACGGACCCAATTCCTTGGCGAT-CTCCA-TGGAC-----GTCTCCATTGCGG 1117 Query 147194 CATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAG 147253 | ||||| || || ||| ||| | ||||| || | | |||| | ||||||| || Sbjct 1118 CGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCACTAGCTTGCTTGCTCTCG-AAC 1176 Query 147254 GCATACG-CAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGA 147312 ||||| || || | || ||||| |||| |||||||| || | || || || ||| Sbjct 1177 GCATAGTTCATGAGGATGAACGCATCAGCCAGACCCTGGACGCCAATACCAATGGGGCGA 1236 Query 147313 TGCTTTTCGT-TGCTGCGCTTC-GCGC-TC-GCTATGGGATAGTGGTTGCGATCAATAAT 147368 || || || || |||| | || || |||| ||||||| |||| ||||| | Sbjct 1237 TGA----CGCATGTTGGACTTCCGAGCCTCTGCTACAGGATAGTAGTTGACGTCAATGAC 1292 Query 147369 CTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGT 147428 |||||||||||| || | || || | | | ||||||| | | || | Sbjct 1293 CTTGTTGAGGTTGCGAGTGATCACCTTGACCACTTCATACAGTTTCTGGTAGTCGAACAC 1352 Query 147429 CCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGT 147488 || || || |||| || |||| || || | |||||||| ||||| || ||| Sbjct 1353 GCCCTCGTC--CACGAAC---TTGGG-CAGCGCCACAGACGCCAAGTTGCACACTGCCAC 1406 Query 147489 CTCTTCGG-CGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTC 147547 ||| |||| || || |||||| || | ||| ||| | ||||||| | || | Sbjct 1407 CTCATCGGGCGACG-TGTACTCCATCACCTCGCAGCATAAGTTGCTGGAGCGGATCGTGC 1465 Query 147548 CCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGC 147607 ||| || ||||| || || || ||| ||||| ||| ||||||| | || | | Sbjct 1466 CCAGGTTCTGCTGGTTCGACTTGCGGTTGGCTGCGTCCTTGTAGAGCATAAAGGGCACTC 1525 Query 147608 CGGTCTCGACTTGCGTTTCAACGATA---AACCTATGCAGGTCCTGCGCTCGCACCCGCT 147664 | ||||||| |||| || | ||| |||| ||| | ||| || | || Sbjct 1526 CCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA---CAGCTGCTGGGCGTTAATGGTCT 1582 Query 147665 GCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGC 147724 |||| ||| || || || |||||| || |||| | ||||||||||| || ||| Sbjct 1583 TCCGAGCGCGTCCTTCCTTCTCGTACTTTTCATACAGCGCTTCAAACTCGTCTCCCCAGC 1642 Query 147725 AATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAA 147784 | ||| || || ||| | | ||||| | || |||| | | | || | | Sbjct 1643 ACTCGTAGAGACCAGGAGCTTCGTTAGGACAGAATAGACTCCACTTACCATTGGCCTCCA 1702 Query 147785 CGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCG--CGCTTTGCA 147842 | | ||| || ||||| |||||||| |||||||| | | || || ||| |||| Sbjct 1703 CTCTCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAGAACAAGTCACGAGCGCGGTGCA 1762 Query 147843 A-TCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCA-CGCTATAGATGTCGGCGTGCCAG 147900 || | | || | ||||| || || || | | | | | | ||| |||||||| Sbjct 1763 GCTCGTTGCCGTGGTTCTTGCG---CAGATCCAGGAACTCGA-ACACGTCTGCGTGCCAT 1818 Query 147901 GGTTCAATGTAGACGGCCAGCGCACCTTTACGCTT---TCCGCCCTGGTCGACATGGCGC 147957 || || | |||| || | | ||||| ||||| |||||||||||| |||| ||| Sbjct 1819 GGCTCCAAATAGATAGCAAAGGATCCTTTGCGCTTACCTCCGCCCTGGTCCACATAGCGA 1878 Query 147958 ACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAA 148017 || ||| ||||||||| |||| |||||| | ||| | | | ||| || ||| Sbjct 1879 GCCGTGTCGTTAAACACACGCAGCATGGGGATAATGCCATTGGAGGAGCCATTCGTGCCG 1938 Query 148018 TTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTAC 148077 ||| | |||| | |||||| | | ||||| | | |||||| || || | || Sbjct 1939 CGGATGTAGCTGTTGGTGGCTCGGATGTTGTGCATACTGATGCCAATACCTCCCGCCCAC 1998 Query 148078 TTTGATATGGCAGCGCAATCGCCCAA---TGTCGTGTAGATGCCGTCGATGCTGTCGTTT 148134 || |||||| ||||| | || | |||||| ||||||| ||||| ||| | Sbjct 1999 TTGGATATGCACGCGCATT-GCTTGAGCGTGTCGT--AGATGCCCTCGATCGAGTCATCC 2055 Query 148135 TTGAC-GCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAG 148193 | | ||||| | ||||| ||| ||| || ||| |||| || || ||| || Sbjct 2056 TGCATTGCCAAT-AGGAAACAAGAAGACAGCTGAGGACGTGGCGTGCCGGCGTTGAAGAG 2114 Query 148194 GGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTC 148253 || || |||||||||| || || ||||| ||| | |||||||| | ||| | Sbjct 2115 AGTAGGGGTCGCGTGCGTGAAGAACTTTTGCGACATGAGCTCGTACGTCTCGAGCGCGGC 2174 Query 148254 TTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 | ||||||| ||| ||||||||||| ||||||| | ||| ||||| || || || Sbjct 2175 CTGGATGTCGCTCTTGTGGATGCCCAGCGCCACGCGCAGAATCATCTGCTGCGGCCGCTC 2234 Query 148314 GGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTA 148373 | |||| || | || || || || ||||| || ||| | |||||||| Sbjct 2235 CACCACTTTGCCATTCACGCGGAAGAGGTAGCCTCGCTCGAGCGTCTTGAAGCCAAAGTA 2294 Query 148374 CTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 | ||| || || || | |||| |||||||| Sbjct 2295 GTCGTACTCGAAGTCGCGGTCGTGGATGATGGCCG 2329 >seq7195 Length=47515 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| ||||| || | | ||||| || || |||||||||||||||| || Sbjct 44578 ACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 44519 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| ||||| | |||| |||||||| || || || || ||||| Sbjct 44518 GCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 44459 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || ||||| |||| | || | | || | |||||||| || | Sbjct 44458 TTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAG 44399 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || |||| ||| || | |||||||||||| Sbjct 44398 GGTAATCGTCTTGCCCGTCAAAGTCTTGACGAAAATCTGCAT 44357 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| ||||| || | | ||||| || || |||||||||||||||| || Sbjct 44806 ACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 44747 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| ||||| | |||| |||||||| || || || || ||||| Sbjct 44746 GCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 44687 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || ||||| |||| | || | | || | |||||||| || | Sbjct 44686 TTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAG 44627 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||| || || |||| || || | ||| ||||||||| Sbjct 44626 GGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCATG 44584 >seq5421 Length=2020 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||||| || || ||| || ||||| || || | Sbjct 1108 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCG 1049 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || |||||||| || || ||| || || |||| Sbjct 1048 AAGATAAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACG 989 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| |||| ||| | ||| || || || || || || Sbjct 988 TTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTTAGCGTCTTC 929 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 928 ACGAAGATCTGCATG 914 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||||| || || ||| || ||||| || || | Sbjct 1336 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCG 1277 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || |||||||| || || ||| || || |||| Sbjct 1276 AAGATAAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACG 1217 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| |||| ||| | ||| || || ||||| || || Sbjct 1216 TTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTC 1157 Query 132110 ATGAAAATCTGCATG 132124 | || ||||||||| Sbjct 1156 ACAAAGATCTGCATG 1142 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||| || |||| || Sbjct 908 ACGCAGACGCAGTACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAATCACTCAGTGT 849 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || || | | || || ||||| || || || || ||||| Sbjct 848 GCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCC 789 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||| || || |||| | || | | || | ||||||||| |||| Sbjct 788 TTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAG 729 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||| || || || || || || | |||||||||||| Sbjct 728 CGTGATCGTCTTGCCCGTTAGCGTCTTCACGAAAATCTGCAT 687 >seq7887 Length=10481 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| || | || | | | ||||| || || ||||||||||| || || Sbjct 1220 ACGCAGACGCAGCACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGT 1161 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || |||||||| || |||| |||| |||||||| || || || || ||||| Sbjct 1160 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 1101 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||||| || || | | || | | || | ||||||||| |||| Sbjct 1100 CTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAG 1041 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || || || || || || | |||||||||||| Sbjct 1040 CGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476518457418120