Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_025963.1 Length=139981 Score E Sequences producing significant alignments: (Bits) Value seq7380 82.4 7e-11 >seq7380 Length=4531 Score = 82.4 bits (90), Expect = 7e-11 Identities = 129/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 5340 CTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTCTCTTGGC-CGA 5398 |||| |||||| |||||||||||||| || ||| || |||| || | || ||| Sbjct 1718 CTCGAGGATGAGTTGCGCCACGCGGTCCCCGCGCTTGACGGGGAAG---TCGTCGCTCGA 1662 Query 5399 A--GTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACGCCCGCTCC 5456 | |||||| || | ||| |||| ||| || ||| |||| | ||| | |||||| || || Sbjct 1661 ATGGTTGAACAGAATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATGACGCCAGCGCC 1602 Query 5457 CACATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGCCACGCGACCGTAGCAGCC 5516 | ||| | ||| || || ||||| || || | || || || || |||||||||| Sbjct 1601 CGTATCGATGAATTTCTTCCAGGCGAGGCCTGAGCGAGGGGCTACACGTGCGTAGCAGCC 1542 Query 5517 GT 5518 || Sbjct 1541 GT 1540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447724061538120