Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5234 315 1e-79 seq6779 208 1e-47 seq10576 179 5e-39 seq6658 161 1e-33 seq8839 147 3e-29 seq6842 145 1e-28 seq5172 132 7e-25 >seq5234 Length=8456 Score = 315 bits (348), Expect = 1e-79 Identities = 430/587 (73%), Gaps = 20/587 (3%) Strand=Plus/Plus Query 1455731 GATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGA-TATGGGAAATGTA 1455789 || || || |||||||| || || ||||| |||| | || || | | ||| | ||||| Sbjct 4909 GAGAATCCCAACCGCTTCGTTCTCTTCCCTATCCAGGAGCA-CGAAGTGTGGCAGATGTA 4967 Query 1455790 CCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGC-CGAC--- 1455845 | || ||||||||||||||||| ||||| || |||||| ||||||| || || |||| Sbjct 4968 C-AAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATCGACCT-GGTGCACGACCTC 5025 Query 1455846 ACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCC 1455905 | || | ||| ||| | ||| |||||||||| |||||||||||||| |||||| Sbjct 5026 AAGG---ATTGGACCAAGCTTACGGACAACGAGCGCCACTTCATCAAGCACGTGCTCGCC 5082 Query 1455906 TTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGA 1455965 || || ||| |||||||| || |||||| ||||||| ||||| ||| | || || Sbjct 5083 TTCTT-CGCAGCCAGCGACGGAATCGTGAACGAGAACTTGGCCATGAACTTCAGTAATGA 5141 Query 1455966 GGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCA 1456025 || || |||| ||||| || | || ||||| ||||||||||||||||| |||||||| Sbjct 5142 AGTGCAGGTGCCTGAGGCTCGATGCTTCTACGGATTCCAGATCGCCATCGAGAACATCCA 5201 Query 1456026 CTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCA 1456085 ||| || |||||| || || || ||||| ||| ||||||| || |||||||||| || Sbjct 5202 CTCGGAGGTCTACTCACTGCTCATTGACACGTACATCAAGGATGCGATCGAGAAGGATCA 5261 Query 1456086 CCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAA 1456145 || || || || || || || | |||| || | ||| || || |||||||| | || Sbjct 5262 TCTGTTGCGTGCGATTGAGACCATTCCGTGCGTCACGAAGAAAGCACACTGGGCGCTCAA 5321 Query 1456146 GTGGATCAA--CAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CG 1456202 |||| | | | | | |||| || | ||||| || | | ||||| | || Sbjct 5322 GTGGTGCGACCCTCGTGTGTCCTC----CTACCCGGAGCGTCTACTGGCTTTTGCTGCCG 5377 Query 1456203 TCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCC 1456262 | ||||||||||| |||||||| |||||| ||||||| ||||| |||||||| |||| Sbjct 5378 TTGAGGGCATCTTCTTCTCGGGTTCCTTCTGCTCCATCTTCTGGCTTAAGAAGCGTGGCC 5437 Query 1456263 TCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||||||| || | || |||| ||||| | |||||||| ||||| Sbjct 5438 TCATGCCTGGAC-TCAGCTTCTCGAACGAGCTCATCAGTCGTGACGA 5483 Score = 167 bits (184), Expect = 3e-35 Identities = 243/331 (73%), Gaps = 12/331 (4%) Strand=Plus/Plus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCG-AC 1456506 ||| ||||| ||||| ||||| || || ||| | | ||| |||| |||| | || | Sbjct 5485 GGTATGCACACGGACTTCGCCTGCCTCCTGTACTCCAAGCTGGTCACTAAGCTGCCGGAG 5544 Query 1456507 CGACGTGCCCAAGCAGATCAT-CGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565 | || | || | ||||||| ||| || || || | ||| ||| | ||||| || | | Sbjct 5545 AGCCGCGTGCACG-AGATCATTCGT-GACGCGGTGGTGATTGAGCACGAGTTCGTGCGTG 5602 Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAA 1456625 | ||||||||||||| ||| || ||||||||| | | |||||||||||||||||||| Sbjct 5603 ACTCGCTGCCGGTGGAGCTGATTGGCATGAACTCGGGC-CTCATGTGCCAGTACATTGAG 5661 Query 1456626 TTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCA 1456685 || || || ||||| ||||| |||| || || | ||| ||||| ||| | | Sbjct 5662 TTC-GTTGCTGACCGTCTGCTGTACTCGCTTGG-TGTGTCCAAGATCTACC--ACGCCAA 5717 Query 1456686 --ACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCG 1456743 |||| ||| |||||||| ||||||| ||| |||||||||||||||| |||||| Sbjct 5718 GAACCCTTTCGACTGGATGGACATGATCTCTCTCCAGGGCAAGACCAACTTCTTCGAGAA 5777 Query 1456744 CCGCGT-GGCGAGTACGCCAAGGCCGGCGTC 1456773 || || ||||||||| ||||||| |||||| Sbjct 5778 GCGTGTGGGCGAGTACTCCAAGGCTGGCGTC 5808 >seq6779 Length=4860 Score = 208 bits (230), Expect = 1e-47 Identities = 399/578 (69%), Gaps = 8/578 (1%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 || || |||||||| || || |||||||| | | || | ||| | |||||| || Sbjct 1260 AATCCCAACCGCTTCGTGCTCTTCCCCATTCAGGAGCACGACGTGTGGCAGATGTAC-AA 1202 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGC-CGACACGGTCC 1455852 ||||| ||||||||||| ||||| ||||||||| | || || || || ||| | Sbjct 1201 GAAGGCGGAGGCCTCCTTCTGGACGGCCGAGGAGCTGGAYCT-GGTGCACGATCTCAACG 1143 Query 1455853 ACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTC 1455912 |||||| || | ||| ||||||| || ||||||||| |||| || || || || | Sbjct 1142 ACTGGGCAAAACTCACAGACAACGAGCGTCACTTCATCAAGTACGTTCTGGCGTTCTT-C 1084 Query 1455913 GCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA 1455972 || || || || || ||||| ||||||||||||| ||| | || || || || Sbjct 1083 GCTGCTAGTGACGGTATCGTCAACGAGAACCTGGCCATGAACTTCAGTAATGAAGTGCAG 1024 Query 1455973 TTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAA 1456032 | || || || || | || ||||| ||||||||||| ||||| || |||||||| || Sbjct 1023 ATACCGGAAGCTCGCTGCTTCTACGGCTTCCAGATCGCTATCGAGAATATCCACTCGGAG 964 Query 1456033 ACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTT 1456092 || ||||| || || ||||| ||| |||||||| | || ||||| |||||| | | Sbjct 963 GTGTATTCGCTGCTTATTGACACATACATCAAGGACGCCGTGGAGAAAGACCACTTGCTA 904 Query 1456093 CGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC 1456152 || || ||||| || | || | || ||| |||||| |||||||| | || ||| Sbjct 903 CGTGCTATCGAGACTATCCCATGTGTCCAGAAGAAGGCCAACTGGGCGCTAAAATGGTGT 844 Query 1456153 AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCA 1456211 || | | | ||| | | || ||||| || | | || || || || || || | Sbjct 843 GAC-CCGCGTGTGTCGTC-GTACGCAGAGCGTCTGCTAGCGTTCGCTGCAGTGGAAGGTA 786 Query 1456212 TCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCG 1456271 |||| || ||||| || || || | || ||||| ||||||||||| || ||||| | Sbjct 785 TCTTCTTTTCGGGGTCATTTTGTTCCGTTTTCTGGCTTAAGAAGCGCGGTCTTATGCCTG 726 Query 1456272 GTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||| | |||| ||||| | |||||||| || || Sbjct 725 GTC-TGAGCTTCTCAAACGAGATGATCAGTCGTGATGA 689 >seq10576 Length=3682 Score = 179 bits (198), Expect = 5e-39 Identities = 230/315 (73%), Gaps = 4/315 (1%) Strand=Plus/Minus Query 259873 CGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCT 259932 || ||||| || |||||| ||||||||| |||| ||||| ||||| || || || Sbjct 2172 CGCGCTCGAGACGTACGAGCTCATGTCGCAAAAGTTCTTCACGCACGCGACCCCTACTCT 2113 Query 259933 CTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGC 259992 ||| || ||||||||||| || || ||| || || || || || |||| ||| ||| Sbjct 2112 CTTCAACGCCGGCACGCCACGTCCTCAGCTGTCTTCTTGTTTCCTATTGGCAATGCAGGA 2053 Query 259993 CGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGC 260052 || ||||||||||||||||| |||||||||||||| |||||| ||| |||||| ||| Sbjct 2052 TGACTCGATCGAGGGCATCTACGACACGCTCAAGCAATGCGCGTGCATATCCAAGTGGGC 1993 Query 260053 CGGCGGCATCGGTTTTGCCGCA--CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGC 260110 || || || || | | | | ||||| | || ||| | | |||| | ||| Sbjct 1992 GGGAGGTATTGGCAT--CAGTATGCACAACATCCGAGCCACCAACAGCTACATCCGCGGC 1935 Query 260111 ACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGC 260170 || || ||| ||||| ||| || | |||||||| || || |||||||||||||| ||| Sbjct 1934 ACGAATGGCTCCTCCAATGGCATTATCCCCATGCTGCGTGTGTTTAACGACACGGCTCGC 1875 Query 260171 TACGTCGACCAGTGC 260185 || || |||||| || Sbjct 1874 TATGTGGACCAGGGC 1860 >seq6658 Length=12273 Score = 161 bits (178), Expect = 1e-33 Identities = 210/289 (73%), Gaps = 6/289 (2%) Strand=Plus/Minus Query 724852 CGGTTGGCAAGCGCGGTCGCGGCCAGCGCAAGAAGAATTATGCCTCGTACTCGTCCTTTA 724911 |||||| |||| |||| ||| || |||||||| | || ||||||||| ||| | Sbjct 10562 CGGTTGCCAAGTCCGGTAAGGGCAAGGGCAAGAAGCGTGTTGAGTCGTACTCGACCTACA 10503 Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| ||||||||||| || | | ||| | | | | | | Sbjct 10502 TCTACAAGGTGCTGCGTCAGGTGCACCCGGACACGGGT-----ATCAGCAAGCGCGGC-A 10449 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 ||||||||||||||||||| |||||||||| |||| ||||||| | | |||||||| Sbjct 10448 TGTCGATCATGAACTCGTTCATCAACGACATTTTCGAGCGCATCGCCTCGGAGGCCGGCA 10389 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||| |||||| ||||||| ||| | || |||||||||||||| ||||||| Sbjct 10388 AGCTGTCGCGCTACAACAAGAAGTCGACGCTGTCCAGCCGCGAGATCCAGACGGCCGTGC 10329 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || || | | ||| || ||||||| ||||||||| || || ||||| Sbjct 10328 GTCTCATGCTCCCCGGTGAGCTGGCCAAGCACGCCGTGTCGGAAGGCAC 10280 >seq8839 Length=22210 Score = 147 bits (162), Expect = 3e-29 Identities = 248/353 (70%), Gaps = 6/353 (2%) Strand=Plus/Minus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAG 332932 ||||||||||||||||| || ||||| | | |||||||| | | | ||| | |||||| Sbjct 6609 AAGCGCAGGATGGCACAGCGACTCTGAATAGGCTCGATGATCTTGGTCGAGTTATTGCAG 6550 Query 332933 GCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAGGGCCTGTTG 332991 ||||| || || ||||| || | | ||||| || ||| || || ||||| || Sbjct 6549 GCCAGTGCGAATCGCGTTGTGGCCGAGAAGATCTCCATAGTGCGA-CGTAGAGCCTGCTG 6491 Query 332992 GGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGG 333051 ||| || | || | ||||||||||||| | ||||| ||||||||| ||||| | || Sbjct 6490 GGCTGCAGCGGTCATAGAGTCGGCCTCGTCCAAGATGACGATCTTGTGACGCCCAGGGGG 6431 Query 333052 CAG-ATCAACCCTTTTCGAG-GCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCG 333109 || ||| |||| | | ||| ||||| | ||||||| ||| | ||| Sbjct 6430 AAGCGTCA--CCTTCTGTTGCGCGAACATCTTGATCTTGCTGCGCACCGTGTCGATACCG 6373 Query 333110 CGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACG 333169 || ||||| ||||| ||||| || ||||| |||| | | | ||| | || || Sbjct 6372 CGGTCGTCGGACGCATTGAGCTCAAGCACCGCCTGTTTCATGCTGGTACCGAGCAGCTCG 6313 Query 333170 CGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCAG 333222 ||||| || ||| |||||||||||||||||||| |||||||| || | ||| Sbjct 6312 CGCGCTAGACACAAAATGCTCGTGGTCTTGCCCGTTCCGGGCGGGCCGGACAG 6260 >seq6842 Length=27332 Score = 145 bits (160), Expect = 1e-28 Identities = 194/269 (72%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 724872 GGCCAGCGCAAGAAGAATTATGCCTCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAG 724931 ||| || |||||||| || ||||||||| ||| |||||||||||||| ||| Sbjct 22526 GGCAAGGGCAAGAAGCGCGTTGAGTCGTACTCGACCTACATCTACAAGGTGCTGCGTCAG 22467 Query 724932 GTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTCGTTT 724991 ||||||||| || | | ||| | | | | | |||||||||||||||||||| Sbjct 22466 GTGCACCCCGACACGGGT-----ATCAGCAAGCGCGGC-ATGTCGATCATGAACTCGTTC 22413 Query 724992 GTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAG 725051 |||| ||||| |||| ||||||| | | |||||||| ||| |||| | ||||||| Sbjct 22412 ATCAAYGACATTTTCGAGCGCATCGCCTCGGAGGCCGGAAAGCTGTCGCGTTACAACAAG 22353 Query 725052 CGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAA 725111 ||| | || |||||||||||||| || ||||| || || | | ||| || Sbjct 22352 AAGTCGACGCTGTCCAGCCGCGAGATCCAGACGGCTGTGCGTCTCATGCTCCCCGGTGAG 22293 Query 725112 CTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||||| ||||||||| || |||||||| Sbjct 22292 CTGGCCAAGCACGCCGTGTCGGAGGGCAC 22264 >seq5172 Length=6496 Score = 132 bits (146), Expect = 7e-25 Identities = 213/295 (72%), Gaps = 12/295 (4%) Strand=Plus/Minus Query 1456483 GATGCTCGTCAACAAGCCGTCG-ACCGACGTGCCCAAGCAGATCATCGTCGAGGCCGTCG 1456541 || ||| || ||||||| || | | |||| ||| | ||||| | ||| || || | Sbjct 6099 GAAGCTGGTTAACAAGCTACCGGAGAGTCGTGTCCATG-AGATCCTTCGCGACGCTGTGG 6041 Query 1456542 AGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCA 1456601 ||| ||| | ||||| || |||| |||||||| |||| ||| ||||| |||||| | | Sbjct 6040 TGATTGAGCACGAGTTCGTATGCGACTCGCTGCCTGTGGAGCTTATCGGTATGAACTC-A 5982 Query 1456602 CCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTG 1456661 |||||||||| |||||||||| | ||||| || ||||| || || | || || || Sbjct 5981 GCGCTCATGTGTCAGTACATTG-AGTTTGTGGCGGACCGTCTACTATACTCACT-GGGTG 5924 Query 1456662 CGGAGAAGCACTAC--CG-GACGGCCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCG 1456718 | ||| |||| || || | ||||||||| |||||||| ||||||| || Sbjct 5923 TGTCCAAGATCTACAACGTGAAG---AACCCGTTCGACTGGATGGACATGATCTCACTGC 5867 Query 1456719 AGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCCAAGGCCGGCGT 1456772 |||||||||| ||||| |||||| || || |||||||| ||||||| || || Sbjct 5866 AGGGCAAGACAAACTTCTTCGAGAAGCGTGTGGGCGAGTATTCCAAGGCTGGGGT 5812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176309734237854