Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq7887 152 5e-32 seq7195 143 3e-29 seq5421 132 5e-26 seq9710 118 1e-21 seq13260 87.8 2e-12 seq10576 86.0 6e-12 >seq7887 Length=10481 Score = 152 bits (168), Expect = 5e-32 Identities = 171/224 (76%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || || || ||||| || ||||||||||| | || | ||| Sbjct 1216 AGACGCAGCACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTC--CGACAGAGTGC 1159 Query 134556 GA--GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613 | ||| |||||||| ||||| || || |||| ||||||||| || ||||| ||||| | Sbjct 1158 GGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCT 1099 Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGA 134672 | || || || ||||| || ||||| ||| |||| |||| |||| ||||||||||| Sbjct 1098 CCTTGTCCTGGATTTTCTGCTTGACATTGTC-AATGCTGTCCGACGGCTCCACGTCGAGC 1040 Query 134673 GTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || ||||| || || || | || || |||||||| |||||||| Sbjct 1039 GTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 996 >seq7195 Length=47515 Score = 143 bits (158), Expect = 3e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| || || || ||||| || ||||||||||||| | ||| || Sbjct 44574 AGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGA 44515 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || || || |||| ||||||||| || ||||| |||||||| Sbjct 44514 CCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCC 44455 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || ||||| || || ||| | | ||| || | |||||||| || ||| Sbjct 44454 TTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGGGTA 44395 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || ||||| || |||||||| ||||| ||| Sbjct 44394 ATCGTCTTGCCCGTCAAAGTCTTGACGAAAATCTGCATCTTG 44353 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || |||| || ||||| || || || ||||| || |||||||||||| Sbjct 44814 TTTCCGCCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCG 44755 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| || ||| || ||||| || || || || |||| ||||||||| || ||| Sbjct 44754 CTCAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGC 44695 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || |||||||| || || || || ||||| || || ||| | | ||| || | ||| Sbjct 44694 GGGATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCC 44635 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || || || || || ||||| || ||||| Sbjct 44634 ACGTCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 44585 >seq5421 Length=2020 Score = 132 bits (146), Expect = 5e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| ||||| || ||||| || |||||||| || | | ||| | Sbjct 904 AGACGCAGTACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAATCACTCAGTGTGCGG 845 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || ||||||| |||||||| || ||||| |||||||| Sbjct 844 CCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCC 785 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || ||| | | ||| |||| ||||||||||| || Sbjct 784 TTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTG 725 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || || |||| || || |||||||| ||||| || Sbjct 724 ATCGTCTTGCCCGTTAGCGTCTTCACGAAAATCTGCATCTT 684 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| |||||||| ||||| || ||||||||||||| | ||| | Sbjct 1132 AGACGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 1073 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || || | |||||||| || ||||| |||||||| Sbjct 1072 CCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCGGGATGCCTTCC 1013 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || ||| | | ||| |||| ||||||||||| || Sbjct 1012 TTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTG 953 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || |||| || || ||||| || ||||| Sbjct 952 ATCGTCTTGCCCGTTAGCGTCTTCACGAAGATCTGCAT 915 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || || | ||| ||||| |||||||| ||||| || |||||||||||| Sbjct 1372 TTTCCGCCGCGAAGACGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCG 1313 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| | || || ||||| ||||| || || || | |||||||| || ||| Sbjct 1312 CTCAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGC 1253 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || |||||||| || || ||||| || || || || ||| | | ||| |||| ||| Sbjct 1252 GGGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCC 1193 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || || || || || | || || || || || ||||| Sbjct 1192 ACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 1143 >seq9710 Length=10376 Score = 118 bits (130), Expect = 1e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 ||||||| ||||||||||| | ||| | ||| || ||||| ||||| || || | Sbjct 864 CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 923 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| ||||||||| || ||||| || || || || || || ||||| || ||||| || Sbjct 924 TCAGACGCTGCTGGTCAGGCGGGATTCCYTCCTTGTCCTGGATTTTCTGCTTGACATTGT 983 Query 134644 CCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 ||||| ||||||||| |||||||| || || ||||| || || || || || || || Sbjct 984 -CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 1042 Query 134703 AAAATTTGCAT 134713 || || ||||| Sbjct 1043 AAGATCTGCAT 1053 >seq13260 Length=2999 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || |||| || ||||| ||||| || ||||| || ||||||||||| Sbjct 131 TTTCCGCCGCGAAGACGCAGTACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCA 72 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| | || || ||||| ||||| || ||||||| |||||||| || ||| Sbjct 71 CTCAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGC 12 Query 134604 GGTATGCCTTC 134614 || |||||||| Sbjct 11 GGGATGCCTTC 1 >seq10576 Length=3682 Score = 86.0 bits (94), Expect = 6e-12 Identities = 290/447 (65%), Gaps = 11/447 (2%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || || ||| | ||||||||||| ||||||| ||| ||||| | ||||| | Sbjct 2225 CAGCAGATGATTCTGCGCGTGGCGCTGGGCATCCACAAGAGCGACATCCAGGCCGCGCTC 2166 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTT---ACGCACGCTTCGCCCACCATGTTT 7680 || |||||| | | ||||| | || |||| |||||||| | || || | || Sbjct 2165 GAGACGTACGAGCTCATGTC---GCAAAAGTTCTTCACGCACGCGACCCCTACTCTCTTC 2109 Query 7681 GCCGCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGA 7739 ||| ||||| | || ||||| |||| || ||||| | | | |||| || || Sbjct 2108 AACGCCGGCACGC-CACGTCCTCAGCTGTCTTCTTGTTTCCTATTGGCAATGCAGGATGA 2050 Query 7740 CAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGG 7799 | ||||| ||||| ||| ||||||| | ||||| || ||||| | | || Sbjct 2049 CTCGATCGAGGGCATCTACGACACGCTCAAGCAATGCGCGTGCATATCCAAGTGGGCGGG 1990 Query 7800 CGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAA 7859 || || || | | | || || | || |||| | ||| |||| ||| || Sbjct 1989 AGGTATTGGCATCAGTATGCACAACATCCGAGCCACCAACAGCTACATCCGCGGCACGAA 1930 Query 7860 CGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGT 7919 || ||| || | |||||| |||| ||||| || || ||| || |||| Sbjct 1929 TGGCTCCTCCAATGGCATTATCCCCATGCTGCGTGTGTTTAACGACACGGCTCGCTATGT 1870 Query 7920 AGACCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGC 7976 |||||||| ||| ||||||||||| || ||| |||||||||||||| |||||||| Sbjct 1869 GGACCAGGGCGGAGGTAAGCGCAAAGGATCCTTTGCTATCTATTTGGAGCCATGGCACGC 1810 Query 7977 GGACATTTACGCAGTGCTAAATCTGCG 8003 ||| | | || | || ||||||| Sbjct 1809 AGACGTGTTCGAGTTCCTGGATCTGCG 1783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505300055788840