Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5234 136 5e-27 seq6779 134 2e-26 >seq5234 Length=8456 Score = 136 bits (150), Expect = 5e-27 Identities = 404/617 (65%), Gaps = 7/617 (1%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || | ||||| || | ||| || | ||||| || || |||| Sbjct 5508 GCAGGCGAAGTCCGTGTGCATACCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAG 5449 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 ||||||||| || |||||||| || ||||| || |||| |||| ||| | || || |||| Sbjct 5448 TCCAGGCATGAGGCCACGCTTCTTAAGCCAGAAGATGG-AGCAGAAGGAACCCGAGAAGA 5390 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTA---T 39791 ||||||| || || || ||||| || | || | ||| ||| | || | | Sbjct 5389 AGATGCCCTCAACGGCAGCAAAAGCCAGTAGACGCTCCGGGTAGGAGGACACACGAGGGT 5330 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 |||||| | ||||| | ||||||||| | || || || || || || || ||| Sbjct 5329 CGCACCACTTGAGCGCCCAGTGTGCTTTCTTCGTGACGCACGGAATGGTCTCAATCGCAC 5270 Query 39852 TAAAGAGATAATGTTTTTC-ATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 || |||| || || || ||| | ||| || | || || || || | ||| || Sbjct 5269 GCAACAGATGATCCTTCTCGATCGC-ATCCTTGATGTACGTGTCAATGAGCAGTGAGTAG 5211 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 39970 | || || |||||||| || || || ||||| |||||||| || |||| || |||| Sbjct 5210 ACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAATCCGTAGAAGCATCGAGCCTCAGGC 5151 Query 39971 ATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCG 40030 | || || || || || | ||||| || || ||||| ||||| || || || Sbjct 5150 ACCTGCACTTCATTACTGAAGTTCATGGCCAAGTTCTCGTTCACGATTCCGTCGCTGGCT 5091 Query 40031 GCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAG 40090 || || || || | || || || || || | || | | || | || |||| Sbjct 5090 GCGAAGAAGGCGAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTAAGCTTGGTCCAA 5031 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || |||| || | | || | || ||||| ||||| || || ||||| ||||| Sbjct 5030 TCCTTGAGGTCGTGCACCAGGTCGATCTCCTCAGCAGTCCAGAAGGAGGCCTCGGCCTTC 4971 Query 40151 TTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTT 40210 |||||||| | ||| | || | | || || || || | ||| || | || ||||| Sbjct 4970 TTGTACATCTGCCACACTTCGTGCTCCTGGATAGGGAAGAGAACGAAGCGGTTGGGATTC 4911 Query 40211 TTTGCAAGGATGGGTTC 40227 | | |||| ||||| Sbjct 4910 TCCACGAGGAACGGTTC 4894 >seq6779 Length=4860 Score = 134 bits (148), Expect = 2e-26 Identities = 365/559 (65%), Gaps = 3/559 (1%) Strand=Plus/Plus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||||||||| ||||| || || | ||||||||| | ||| || | ||||| || | Sbjct 657 ACATTAAGCACGCGAAATCCGTGTGCATGCCCTCATCACGACTGATCATCTCGTTTGAGA 716 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAG 39728 | | || |||||||| ||||| ||||| || ||||| || | || | ||| || || | Sbjct 717 AGCTCAGACCAGGCATAAGACCGCGCTTCTTAAGCCAGAAAACGGAACAAAATGACCCCG 776 Query 39729 AAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA- 39787 |||||||||| ||||| ||||| || || || | || | |||| |||| | || Sbjct 777 AAAAGAAGATACCTTCCACTGCAGCGAACGCTAGCAGACGCTCTGCGTACGACGACACAC 836 Query 39788 --TTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTA 39845 | ||| || | ||||| | || ||||||| ||||| || || || || | Sbjct 837 GCGGGTCACACCATTTTAGCGCCCAGTTGGCCTTCTTCTGGACACATGGGATAGTCTCGA 896 Query 39846 TAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGAC 39905 ||||| | | | | ||| || | || || | ||||| || || | ||| Sbjct 897 TAGCACGTAGCAAGTGGTCTTTCTCCACGGCGTCCTTGATGTATGTGTCAATAAGCAGCG 956 Query 39906 TATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTT 39965 ||||| || || ||||| || || || || ||||| || ||||| || || | |||| Sbjct 957 AATACACCTCCGAGTGGATATTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGAGCTT 1016 Query 39966 CAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCAC 40025 | | || || || || || || | |||| || || || || || || |||| Sbjct 1017 CCGGTATCTGCACTTCATTACTGAAGTTCATGGCCAGGTTCTCGTTGACGATACCGTCAC 1076 Query 40026 TAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTAT 40085 |||| || || || |||| || | || || || | || | | ||| | ||| Sbjct 1077 TAGCAGCGAAGAACGCCAGAACGTACTTGATGAAGTGACGCTCGTTGTCTGTGAGTTTTG 1136 Query 40086 TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTG 40145 |||||| |||| ||| | | || | || || || ||||| || || ||||| | Sbjct 1137 CCCAGTCGTTGAGATCGTGCACCAGRTCCAGCTCCTCGGCCGTCCAGAAGGAGGCCTCCG 1196 Query 40146 CCTTTTTGTACATGTTCCA 40164 |||| |||||||| | ||| Sbjct 1197 CCTTCTTGTACATCTGCCA 1215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686775136133880