Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6779 104 2e-17 seq5234 93.3 3e-14 seq12351 84.2 2e-11 >seq6779 Length=4860 Score = 104 bits (114), Expect = 2e-17 Identities = 290/439 (66%), Gaps = 7/439 (2%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 ||| ||||||| || ||||| || ||||| || ||||| || || ||| | | || Sbjct 1098 GTTCTGGCGTTCTTCGCTGCTAGTGACGGTATCGTCAACGAGAACCTGGCCA-TGAACTT 1040 Query 43910 GCGCAA-GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGA 43968 | || ||||| || |||| ||||| || || || || || || || || || || || Sbjct 1039 CAGTAATGAAGTGCAGATACCGGAAGCTCGCTGCTTCTACGGCTTCCAGATCGCTATCGA 980 Query 43969 AAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGA 44028 ||||| || ||||| |||| || || || || || |||||||| || | || Sbjct 979 GAATATCCACTCGGAGGTGTATTCGCTGCTTATTGACACATACATCAAGGACGCCGTGGA 920 Query 44029 GAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACT 44087 ||| | | ||| | ||| || || || | || || | | | | || || ||| Sbjct 919 GAAAGACCACTTGCTACGTGCTATCGAGACTATCCCATGTGTCCAGA-AGAAGGCCAACT 861 Query 44088 GGGCCCTTAAATGGATAAATTCAAATGATTCTTTT---GGAGAACGACTTGTCGCGTTTG 44144 |||| || |||||| | | || || | | ||| || || | ||||| | Sbjct 860 GGGCGCTAAAATGGTGTGACCCGCGTGTGTCGTCGTACGCAGAGCGTCTGCTAGCGTTCG 801 Query 44145 CAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAAC 44204 | | |||||||| || |||||||| || || ||| || | || ||| | ||||| | Sbjct 800 CTGCAGTGGAAGGTATCTTCTTTTCGGGGTCATTTTGTTCCGTTTTCTGGCTTAAGAAGC 741 Query 44205 GAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTAC 44264 | ||| | |||||||| ||| || ||||| ||| | || ||||||||||| ||| | | Sbjct 740 GCGGTCTTATGCCTGGTCTGAGCTTCTCAAACGAGATGATCAGTCGTGATGAGGGCATGC 681 Query 44265 ATTGCGATTTTGCTTGCTT 44283 | ||||| || ||||| Sbjct 680 ACACGGATTTCGCGTGCTT 662 >seq5234 Length=8456 Score = 93.3 bits (102), Expect = 3e-14 Identities = 273/412 (66%), Gaps = 13/412 (3%) Strand=Plus/Plus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || || || || |||||||| || || || || || |||| | | || | || Sbjct 5080 GCCTTCTTCGCAGCCAGCGACGGAATCGTGAACGAGAACTTGGCCA-TGAACTTCAGTAA 5138 Query 43916 -GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 ||||| || | || || || ||||| || || || || || || ||||| || || || Sbjct 5139 TGAAGTGCAGGTGCCTGAGGCTCGATGCTTCTACGGATTCCAGATCGCCATCGAGAACAT 5198 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 || ||||| | ||| || || || || ||||||||||| |||| | ||||||| | Sbjct 5199 CCACTCGGAGGTCTACTCACTGCTCATTGACACGTACATCAAGGATGCGATCGAGAAGGA 5258 Query 44035 TCGATTGTTTAATGCGATAGA-AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCC 44093 || |||| |||||| || | || | | |||| | | | |||||| ||||||| | Sbjct 5259 TCATCTGTTGCGTGCGATTGAGACCATTCCGTGCG-TCACGAAGAAAGCACACTGGGCGC 5317 Query 44094 TTAAATGGATAAATTCAAATGATTCTT-----TTGGAGAACGACTTGTCGCGTTTGCAGT 44148 | || ||| | | || || | |||| || || | || ||||| | Sbjct 5318 TCAAGTGGTGCGACCCTCGTGTGTCCTCCTACCCGGAG--CGTCTACTGGCTTTTGCTGC 5375 Query 44149 TGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAG 44207 || || ||||| ||||| || || || || ||| |||| || ||| | ||||| || | Sbjct 5376 CGTTGAGGGCATCTTCTTCTCGGGTTCCTTCTGC-TCCATCTTCTGGCTTAAGAAGCGTG 5434 Query 44208 GTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGG 44259 | | |||||||| | | || || || ||| | || |||||||| || || Sbjct 5435 GCCTCATGCCTGGACTCAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGG 5486 >seq12351 Length=7116 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 41003 CCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACC 41062 |||||| || | ||| ||||||||||| | || | | ||||||| ||||||| Sbjct 4996 CCGACGGATTGTCCTGTCGGCGTGGAACCCGGCTGATCTCAACGAGATGGCACTGCCACC 5055 Query 41063 TTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCA 41122 ||| || |||| || ||||| ||||| | | || ||| | || || || |||| || Sbjct 5056 TTGCCACATGTTCTGCCAGTTCTACGTGGCCGACGGGGAATTATCGTGCCAGATGTACCA 5115 Query 41123 AAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCAC 41182 | || | ||||||||||| || || || || ||||| || || || || ||||| || Sbjct 5116 GCGTTCGGCCGACATGGGACTTGGCGTGCCATTCAACATCGCCAGCTACGCGCTGCTGAC 5175 Query 41183 G 41183 | Sbjct 5176 G 5176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397380593529835