Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq7195 102 7e-17 seq5421 91.5 1e-13 >seq7195 Length=47515 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| |||| || | ||||| || || || || |||||||||| Sbjct 44585 TGCCACCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGC 44526 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| |||| |||| || ||||| ||||| ||| | || |||||||| || || |||| Sbjct 44525 TCAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGCG 44466 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || |||||| | |||| | | || | | ||| | | || | Sbjct 44465 GGATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCA 44406 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | |||||||||| ||| || || || || ||||| Sbjct 44405 CGTCCAGGGTAATCGTCTTGCCCGTCAAAGTCTTGACGAAAATCTGCAT 44357 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 || || || |||| |||| |||| || | ||||| || || || || ||||||||| Sbjct 44814 TTTCCGCCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCG 44755 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 |||| |||| |||| || ||||| ||||| ||| | || |||||||| || || ||| Sbjct 44754 CTCAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGC 44695 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || || || || |||||| | |||| | | || | | ||| | | || Sbjct 44694 GGGATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCC 44635 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || | |||||||||| || || || ||||| ||||| Sbjct 44634 ACGTCCAGGGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 44585 >seq5421 Length=2020 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 || || ||||| | || | |||| || | ||| || || || || || ||||||||| Sbjct 1372 TTTCCGCCGCGAAGACGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCG 1313 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 |||| |||| | || || ||||| || || ||| | || || ||||| || || ||| Sbjct 1312 CTCAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGC 1253 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || || || || ||||| | |||| | | || | | ||| | | || Sbjct 1252 GGGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCC 1193 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || | ||||||||||| || ||||||||||| ||||| Sbjct 1192 ACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 1143 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | |||| || | ||| || || || || || |||||||||| Sbjct 1143 TGCCACCACGCAGACGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGC 1084 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| |||| | || || ||||| || || ||| | || || ||||| || || |||| Sbjct 1083 TCAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCG 1024 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||| | |||| | | || | | ||| | | || | Sbjct 1023 GGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCA 964 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | |||||||| || || ||||| ||||| ||||| Sbjct 963 CGTCGAGCGTGATCGTCTTGCCCGTTAGCGTCTTCACGAAGATCTGCAT 915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424853780250504