Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq10576 212 8e-50 seq6779 141 1e-28 seq14574 86.0 8e-12 seq5172 86.0 8e-12 seq10590 84.2 3e-11 seq5234 82.4 1e-10 >seq10576 Length=3682 Score = 212 bits (234), Expect = 8e-50 Identities = 1111/1741 (64%), Gaps = 52/1741 (3%) Strand=Plus/Plus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 |||||||| |||||||||||||| | ||||| ||||| | ||||| || | ||| ||| Sbjct 514 TAGTACATGCCGGTCTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGAGTTTG 573 Query 110429 GACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATG-AAGCGCCC 110487 || || || | ||| || ||||| | ||||| ||| ||| ||||||| Sbjct 574 CTGATAGTCGGGTCAGCGATGTGGATGTTCAGAGACTGACTCTGGCAGATGTAAGCGCCA 633 Query 110488 CCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAG 110547 | || |||| || ||| | || ||||| || || ||||| || || || Sbjct 634 CGGTCA-GCCGACAGATCCAGCACGGCCTTCTGTTTGATCTCCCACACAGTTTTGTACTT 692 Query 110548 ATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCAT 110607 | ||||| | ||||| || | || ||||| | || || || | || | || Sbjct 693 GTCCTTGACGTGGTCTGGAATGGCCTTGACCTTCTGCACAGATCCACCGTCATTTAGAAT 752 Query 110608 GAGATCCTTCATA-TCCTTG-GACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGC 110665 ||| | | || | || | | ||||| || | || | || || || | |||| | Sbjct 753 CTGAT--TACGTACTTCTGGTGTCCAGATTCCCAGCTCAATAAGCTCCTTCATCAGGTAC 810 Query 110666 TTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTAT 110725 |||||||| || |||||| || || || | | ||| ||||| | ||||| Sbjct 811 TTGTTGACGATCGTAAACTCGCCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGTAA 870 Query 110726 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 110785 || || | | | ||||| || |||| ||| || || ||||| || || ||||| ||||| Sbjct 871 GGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCTGTGGACGCCGTCGGCATCGGTGCA 930 Query 110786 ATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATG-CGT--TCCTTGAGAACATCCCAG 110842 | || || ||| |||||||| | | |||| ||| |||||||| | ||||| Sbjct 931 ACCAGCAGTGAGTTGCGAAGACCGTATT---TGATTACGTCATCCTTGAGTGCCGCCCAG 987 Query 110843 T--CGTAGTTGAGCTT--GGTTTCACCTTCCCACATGTCAAACTGAAGCAC-CCCTTGGG 110897 | | ||| || | ||| | || |||||||||| ||||| | || ||||| Sbjct 988 TTCCAGAGTCCAGATGCAGGTGTGACGC-CCCACATGTCGAACTGGAAGACGCCCTT--- 1043 Query 110898 AC--GCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCT 110955 || || || || |||| || || || || | ||| | | || | || | Sbjct 1044 ACTGGCAGGGGAGCCCTGGAACGTCTCGTACGGACCCAATTCCTTGGCGATCTCCATGGA 1103 Query 110956 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 111015 || ||||| | |||| || || || || ||||| || | ||| | |||| Sbjct 1104 CGTCTCCATTGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCACTAGCTTG 1163 Query 111016 ATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAA 111075 | || || || ||| | || || |||| || ||||| || || || | Sbjct 1164 CTTGCTCTCGAACGCATAGTTCATGAGGATGAACGCATCAGCCAGACCCTGGACGCCAAT 1223 Query 111076 ACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT-CAACGGGATAAAAATTTC 111134 |||||| || | || ||||| || ||||| || || ||| | || ||||| | || Sbjct 1224 ACCAATGGGGCGATGACGCATGTTGGACTTCCGAGCC-TCTGCTACAGGATAGTAGTTGA 1282 Query 111135 TGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCAT 111194 ||||||||| ||| || || || | | ||| | ||||| ||||| | | Sbjct 1283 CGTCAATGACCTTGTTGAGGTTGCGAGTGATCACCTTGACCACTTCATACAGTTTCTGGT 1342 Query 111195 AATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGC 111254 | || || || ||| || || |||| || || || | || ||||| |||| Sbjct 1343 AGTCGAACACGCC---CTCGTCCACGA---ACTTGGGCAGCGCCACAGACGCCAAGTTGC 1396 Query 111255 AAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTG---GAAC 111311 | || ||| |||||| |||||||| | | || ||||||||| || | Sbjct 1397 ACACTGCCACCTCATCGGGCGACGTGTACTCCATCACCTCGCAGCATAAGTTGCTGGAGC 1456 Query 111312 TCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCA 111371 ||||| |||| |||| ||||| ||| |||| || ||||||||||||| Sbjct 1457 GG---ATCGTGCCCAGGTTCTGCTGGTTCGACTTGCGGTTGGCTGCGTCCTTGTAGAGCA 1513 Query 111372 TGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTG 111431 | ||||| |||||||| |||| | | || || || ||| || | || | Sbjct 1514 TAAAGGGCACTCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTGGGC 1571 Query 111432 GTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACT 111488 || ||||| || || ||||| ||| |||||||||| || || |||||||||| Sbjct 1572 GTT-AATGGTCTTCCGAGCGCGTCCTTCCTTCTCGTACTTTTCATACAGCGCTTCAAACT 1630 Query 111489 CCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGA 111547 | || ||| | || ||| ||||||| || || | || |||||||| ||| ||| | | Sbjct 1631 CGTCTCCC-CAGCACTCGTAGAGACCAGGAGCTTCGTTAGGACAGAATAGACTCCACTTA 1689 Query 111548 CCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCT 111607 ||| |||| || | ||||||||| || || || | ||| || | | || | || Sbjct 1690 CCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAGAACAAGTCA 1749 Query 111608 CTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATC 111666 | | | | | || | |||| || ||||| || | || |||||||| | | || Sbjct 1750 CGAGCGCGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGATCCAGGAACTCGAACACGTC 1808 Query 111667 CGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATT 111723 |||||||||||||| | ||||| || | ||||| || || || || | || | Sbjct 1809 TGCGTGCCATGGCTCCAAATAGATAGCAAAGGATCCTTTGCGCTTACCTCCGCCCTGGTC 1868 Query 111724 TACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACC 111783 |||||||| || ||| ||||||| || || ||||| || ||||| |||| || || Sbjct 1869 CACATAGCGAGCCGTGTCGTTAAACACACGCAGCATGGGGATAATGCCATTGGAGGAGCC 1928 Query 111784 ATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCCAATAC 111842 ||| || || || || || | || |||||| | | || || || ||||||| Sbjct 1929 ATTCGTGCCGCGGAT-GTAGCTGTTGGTGGCTCGGATGTTGTGCATACTGATGCCAATAC 1987 Query 111843 CCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTG 111902 | || |||||||| || || ||| || | | | || || | ||||| || | ||| | Sbjct 1988 CTCCCGCCCACTTGGATATGCACGCGCATTGCTTGAGCGTGTCGTAGATGCCCTCGATCG 2047 Query 111903 AGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCAT 111962 |||| |||| | || | ||||| ||| |||| ||| || | ||| || || || | Sbjct 2048 AGTCATCCTGCATTGCCAATAGGAAACAAGAAGACAGCTGAGGACGTGGCGTGCCGGCGT 2107 Query 111963 TGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCA 112022 ||||||| || || || ||||| |||| | ||| ||||| ||||| ||||| | Sbjct 2108 TGAAGAGAGTAGGGGTCGCGTGCGTGAAGAACTTTTGCGACATGAGCTCGTACGTCTCGA 2167 Query 112023 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTG 112082 | | | ||||| | ||||||||| | || || |||| | ||| | ||| | Sbjct 2168 GCGCGGCCTGGATGTCGCTCTTGTGGATGCCCAGCGCCACGCGCAGAATCATCTGCTGCG 2227 Query 112083 G 112083 | Sbjct 2228 G 2228 >seq6779 Length=4860 Score = 141 bits (156), Expect = 1e-28 Identities = 384/578 (66%), Gaps = 16/578 (3%) Strand=Plus/Plus Query 122370 ATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 122429 ||| || || || |||||||| |||||||| ||||| || | || || | ||||| Sbjct 379 ATACTCGCCCACACGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGTGAGATCATGTCCAT 438 Query 122430 AAAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACG 122489 |||| || || |||||| |||| | || | ||| | | | | || ||||| Sbjct 439 CCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACACACTCAGTGAGTATAGTAGACG 498 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT-AC 122548 ||||| |||| |||||||||| | |||| | | |||||||||||||| || | || Sbjct 499 ATCCGCCACAAACTCAATGTATTGACACATGAGCGCTGAGTTCATACCGATAAGCTCCAC 558 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 | || || | ||| | | |||| | | ||||||| | || || || | ||| ||| Sbjct 559 A-GGCAGCGAGTCGCACACGAACTCGTGCTCAATCACCACAGCATCGCGAATGATCTCGT 617 Query 122609 GGATAGT----TTCGGTAGTGGGTCTATTA-CGCAAAGT-CTTGAAGAGCTCCACGGCAA 122662 ||| | | ||||| || | || | ||| | | ||| |||| || Sbjct 618 GGACACGGCTCTCCGGTATCTTGTTAACTAGCTTCGAGTACATTAAG-----CACGCGAA 672 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | ||| ||| | |||||||| || || | || |||||||||| ||||| |||| Sbjct 673 A-TCCGTGTGCATGCCCTCATCACGACTGATCATCTCGTTTGAGAAGCTCAGACCAGGCA 731 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 | ||||| |||||||| | ||| ||| | || |||||||| || ||||||||||| | Sbjct 732 TAAGACCGCGCTTCTTAAGCCAGAAAACGGAACAAAATGACCCCGAAAAGAAGATACCTT 791 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGAC-TTTGCATCAAACCAT 122841 |||| || ||||| | || || || ||| | || ||| || | ||| ||||| Sbjct 792 CCACTGCAGCGAACGCTAGCAGACGCTCTGCGTACGA-CGACACACGCGGGTCACACCAT 850 Query 122842 TTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAAC 122901 || | ||||| || |||||||||| | |||||| | ||| | ||| || | || Sbjct 851 TTTAGCGCCCAGTTGGCCTTCTTCTGGACACATGGGATAGTCTCGATAGCACGTAGCAAG 910 Query 122902 TGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 122939 || | || || | ||||| |||||| ||||||| Sbjct 911 TGGTCTTTCTCCACGGCGTCCTTGATGTATGTGTCAAT 948 >seq14574 Length=2826 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 2766 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 2707 Query 145342 CAGGTAGGAGCT 145353 | |||||||||| Sbjct 2706 CCGGTAGGAGCT 2695 >seq5172 Length=6496 Score = 86.0 bits (94), Expect = 8e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 122370 ATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 122429 ||| || || || |||||||| |||||||| ||||| || | || || | ||||| Sbjct 5826 ATACTCGCCCACACGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGTGAGATCATGTCCAT 5885 Query 122430 AAAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACG 122489 |||| || || |||||| |||| | || | ||| || | | | || ||||| Sbjct 5886 CCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACACACCCAGTGAGTATAGTAGACG 5945 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT-TAC 122548 |||| |||| |||||||||||| |||| | | |||||||||||||| || | || Sbjct 5946 GTCCGCCACAAACTCAATGTACTGACACATGAGCGCTGAGTTCATACCGATAAGCTCCAC 6005 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTC 122594 | || || | ||| | | |||| | | ||||||| | || || || Sbjct 6006 A-GGCAGCGAGTCGCATACGAACTCGTGCTCAATCACCACAGCGTC 6050 >seq10590 Length=17674 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 182660 AAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACC 182719 ||| ||||| |||| || || || || ||| | ||| || || || ||||| ||||| Sbjct 10479 AAGTTGTGCGACCGTGGCATCACGCACGTTCAAAAGTTTGCCACGCAGAGGGAAGACACC 10420 Query 182720 GTAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACC 182779 ||| || ||||| |||||||| | || || || || || || | ||||| |||||||| Sbjct 10419 GTACTGGTCACGTCCAACGACTGCCAGTCCAGCCACTGCAAGAGCCTTCGCTGAATCACC 10360 Query 182780 CTCCGTGACAATGAGAGTACACTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCGTCATC 182839 ||| || | || || | |||| | || | | ||| ||| |||||| || || Sbjct 10359 CTCTGTCAATATAAGCGAGCACTCGCTTGAGCGAGGACCACCGGCCAGGTTCGCATCCTC 10300 Query 182840 CAACTTGGGAA 182850 | |||||||| Sbjct 10299 AAGCTTGGGAA 10289 >seq5234 Length=8456 Score = 82.4 bits (90), Expect = 1e-10 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 ||| || ||| ||| | |||||| || || || || || || ||||||| || || Sbjct 5505 GGCGAAGTCCGTGTGCATACCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTGAGTCC 5446 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 |||||||| || |||||||| | ||| | || | |||||| || || ||||||||||| Sbjct 5445 AGGCATGAGGCCACGCTTCTTAAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAGAT 5386 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAG 122820 ||||| || ||||| || | || || || | | ||||| Sbjct 5385 GCCCTCAACGGCAGCAAAAGCCAGTAGACGCTCCGGGTAGGAG 5343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627909792823200