Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq10576 226 3e-54 seq5234 134 2e-26 seq10590 104 3e-17 seq6779 86.0 7e-12 seq5172 86.0 7e-12 >seq10576 Length=3682 Score = 226 bits (250), Expect = 3e-54 Identities = 1081/1684 (64%), Gaps = 62/1684 (4%) Strand=Plus/Minus Query 104285 GAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAAT 104344 ||||| ||||| ||||| ||| | |||| ||||| || || || |||||||| Sbjct 2165 GAGACGTACGAGCTCATGTCGCAAAAGTTCTTCACGCACGCGACCCCTACTCTCTTCAAC 2106 Query 104345 GCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCA 104404 || || || ||| | || || |||| ||| ||||| | || | |||| ||||| Sbjct 2105 GCCGGCACGCCACGTCCTCAGCTGTCTTCTTGTTTCCTATTGGCAATGCAGGATGACTCG 2046 Query 104405 ATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGT 104464 ||| | || ||||| | || || | | | || ||| || || |||||||| || ||| Sbjct 2045 ATCGAGGGCATCTACGACACGCTCAAGCAATGCGCGTGCATATCCAAGTGGGCGGGAGGT 1986 Query 104465 ATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAAATGG 104523 ||||| || || || | | |||||| || | || || || || || ||||| Sbjct 1985 ATTGGCATCAGTATGCACAACATCCGAGCCACCAACAGCTAC-ATCCGCGGCACGAATGG 1927 Query 104524 TCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAA 104583 || |||| ||||| || ||||| || || ||||||| ||| || |||||||| | Sbjct 1926 CTCCTCCAATGGCATTATCCCCATGCTGCGTGTGTTTAACGACACGGCTCGCTATGTGGA 1867 Query 104584 TCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGA 104640 || | || || || || ||||| | || ||||| | |||||||||||||| || Sbjct 1866 CCAGGGCGGAGGTAAGCGCAAAGGATCCTTTGCTATCTATTTGGAGCCATGGCACGCAGA 1807 Query 104641 TATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC-CGCG 104699 | | |||||||| || |||| ||||| || ||||| | | | | || || | Sbjct 1806 CGTGTTCGAGTTCCTGGATCTGCGCAAGAACCACGGCAACGAGCTG-CACCGCGCTCGTG 1748 Query 104700 ATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCA 104759 | | |||| ||| |||||| | || |||||||||||||||||||| |||| | ||| | Sbjct 1747 ACTTGTTCTACGCGCTCTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAGGCCAATGGTA 1688 Query 104760 ATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGAG 104818 | ||| ||| || ||||| || | || |||||||||| ||| ||| | ||| || ||| Sbjct 1687 AGTGGAGTCTATTCTGTCCTAACGAAGCTCCTGGTCTCTACGAGTGCTG-GGGAGACGAG 1629 Query 104819 TTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGT-----GC 104873 |||||||| || || |||||||||| | ||||| || || ||| | | Sbjct 1628 TTTGAAGCGCTGTATGAAAAGTACGAGAAGGAAGGACGCGCTCGGAAGACCATTAACGCC 1569 Query 104874 CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933 |||| || ||||| || || || | | || | |||||| || || | | Sbjct 1568 CAGCAGC-----TGTGGTTCGCCATCCTGGACGCGCAGATCGAGACGGGAGTGCCCTTTA 1514 Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 104993 |||| ||||| ||||| |||| ||| || || |||| |||| |||| Sbjct 1513 TGCTCTACAAGGACGCAGCCAACCGCAAGTCGAACCAGCAGAACCTGGGCACGATC---C 1457 Query 104994 GTTC---CAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 105050 | || ||| | || || | |||| | || |||||| ||| |||| Sbjct 1456 GCTCCAGCAACTTATGCTGCGAGGTGATGGAGTACACGTCGCCCGATGAGGTGGCAGTGT 1397 Query 105051 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATT 105110 | ||| | || || | || || ||||||| ||||| | || | || || | Sbjct 1396 GCAACTTGGCGTCTGTGGCGCTGCCCAAGTTCGTGGA-CGAGGG-----CGTGTTCGACT 1343 Query 105111 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATA 105170 | | ||||| | ||||| || |||| ||||| |||| || ||||| Sbjct 1342 ACCAGAAACTGTATGAAGTGGTCAAGGTGATCACTCGCAACCTCAACAAGGTCATTGACG 1283 Query 105171 GAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 105229 || | || || || | ||| ||||| || || || ||| | || || || |||||| Sbjct 1282 TCAACTACTATCCTGTAGCAGA-GGCTCGGAAGTCCAACATGCGTCATCGCCCCATTGGT 1224 Query 105230 CTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGAC 105289 | || || |||||||| || |||| ||||| || | | || || || | | Sbjct 1223 ATTGGCGTCCAGGGTCTGGCTGATGCGTTCATCCTCATGAACTATGCGTTCGAGAGCAAG 1164 Query 105290 GAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCG 105349 |||| | || |||| | ||| || ||||| || || ||||||| | ||| | Sbjct 1163 CAAGCTAGTGAGCTCAACAAGAACATCTTCGAGACGATCTACTACGCCGCAATGGAGAC- 1105 Query 105350 AGTTCA--GAGTTGGCAGAGG--TTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGC 105405 || || ||| | || ||| ||| ||||| || || || || |||| || || || Sbjct 1104 -GTCCATGGAGATCGCCAAGGAATTG--GGTCCGTACGAGACGTTCCAGGGCTCCCCTGC 1048 Query 105406 TTCA-CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACC--AAGCTTCACTACG 105461 || ||||| || | || || || ||||||| || | ||| | || ||| | Sbjct 1047 --CAGTAAGGGCGTCTTCCAGTTCGACATGTGGG-GCGTCACACCTGCATCTGGACTCTG 991 Query 105462 --ACTGGGAAGCTCTCAAGGA--ACG-CATCAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516 |||||| || |||||||| ||| |||| | | |||||||| ||| || || Sbjct 990 GAACTGGGCGGCACTCAAGGATGACGTAATCA---AATACGGTCTTCGCAACTCACTGCT 934 Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 105576 | || || ||||| || || ||||| || || ||| |||| || ||||| | | | || Sbjct 933 GGTTGCACCGATGCCGACGGCGTCCACAGCTCAGATCCTGGGCAACAATGAGTCCATCGA 874 Query 105577 ACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 105636 || |||||| | ||||| || | | || || || |||||| ||| ||||| Sbjct 873 GCCTTACACGTCCAACATGTACAACCGCCGTGTGCTGGCCGGCGAGTTTACGATCGTCAA 814 Query 105637 CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTC-CAAGGA-TATGAAGGAT 105694 |||| | || || | || || | ||| | || ||||| | | || | || | | || Sbjct 813 CAAGTACCTGATGAAGGAGCTTATTGAGCTGGGAATCTGGACACCAGAAGTACGTA--AT 756 Query 105695 CTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAG 105754 | || | || | ||||| || | || || | || |||||| | | | ||| Sbjct 755 CAGATTCTAAATGACGGTGGATCTGTGCAGAAGGTCAAGGCCATTCCAGACCACGTCAAG 696 Query 105755 AAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGAT 105814 | |||| || || ||||| ||||| ||||| || | || || | || || Sbjct 695 GACAAGTACAAAACTGTGTGGGAGATCAAACAGAAGGCCGTGCTGGATCTGTCGGCTGAC 636 Query 105815 CGTGGTCGCTT-CATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGAT 105873 ||||| ||||| ||| || ||||| | |||| || ||| | || || || Sbjct 635 CGTGG-CGCTTACATCTGCCAGAGTCAGTCTCTGAACATCCACATCGCTGACCCGACTAT 577 Query 105874 GTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTA 105933 ||| ||| | || |||||| | ||| ||||||||||| ||||| || || ||||| Sbjct 576 CAGCAAACTCACGTCCATGCACTTCTACGCCTGGAAGAAGGGACTCAAGACCGGCATGTA 517 Query 105934 TTAC 105937 ||| Sbjct 516 CTAC 513 >seq5234 Length=8456 Score = 134 bits (148), Expect = 2e-26 Identities = 192/270 (71%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||||| |||||| | || || || || || | Sbjct 5221 CTCATTGACACGTACATCAAGGATGCGATCGAGAAGGATCATCTGTTGCGTGCGATTGAG 5280 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 94791 || ||||||| | |||||||| | ||||| | ||||||| || | ||| Sbjct 5281 ACCATTCCGTGCGTCACGAAGAAAGCACACTGGGCGCTCAAGTGGTGCGACCC----TCG 5336 Query 94792 CGT----TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 || |||| | ||||| || | || ||||| |||||||| ||||||||||| Sbjct 5337 TGTGTCCTCCTACCCGGAGCGTCTACTGGCTTTTGCTGCCGTTGAGGGCATCTTCTTCTC 5396 Query 94848 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 |||||||||||| | || | ||||| |||||||| || |||||||| || ||| |||| Sbjct 5397 GGGTTCCTTCTGCTCCATCTTCTGGCTTAAGAAGCGTGGCCTCATGCCTGGACTCAGCTT 5456 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| |||||||| ||| |||||||||||| Sbjct 5457 CTCGAACGAGCTCATCAGTCGTGACGAGGG 5486 >seq10590 Length=17674 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 169313 AGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCG 169372 || |||| ||| | |||||| || || ||| | || ||||| ||||||||||||||| Sbjct 10478 AGTTGTGCGACCGTGGCATCACGCACGTTCAAAAGTTTGCCACGCAGAGGGAAGACACCG 10419 Query 169373 TAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCC 169432 || || ||||| |||||||| | || || || ||||| |||| |||||| || |||||| Sbjct 10418 TACTGGTCACGTCCAACGACTGCCAGTCCAGCCACTGCAAGAGCCTTCGCTGAATCACCC 10359 Query 169433 TCGGTGACGATGAGCGTACATTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCC 169492 || || | || |||| || | | || | | ||| ||| ||||||||| || Sbjct 10358 TCTGTCAATATAAGCGAGCACTCGCTTGAGCGAGGACCACCGGCCAGGTTCGCATCCTCA 10299 Query 169493 AATTTGGGAA 169502 | ||||||| Sbjct 10298 AGCTTGGGAA 10289 >seq6779 Length=4860 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || || ||||||||||| || || || || || | ||| ||||| |||||||| ||| Sbjct 795 GTGGAAGGTATCTTCTTTTCGGGGTCATTTTGTTCCGTTTTCTGGCTTAAGAAGCGCGGT 736 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 || ||||| ||||| ||||||| |||||| | ||| |||||| ||||| Sbjct 735 CTTATGCCTGGTCTGAGCTTCTCAAACGAGATGATCAGTCGTGATGAGGG 686 >seq5172 Length=6496 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 94841 TCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTC 94900 ||||||| || || |||||| | ||| ||||| ||||| || ||||| ||||| |||| Sbjct 2940 TCTTCTCGGGCTCGTTCTGCTCAGTTTTCTGGCTTAAGAAACGCGGTCTTATGCCTGGTC 2999 Query 94901 TCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 | ||||||| |||||| | ||| |||||||||||| Sbjct 3000 TGAGCTTCTCAAACGAGATGATCAGTCGTGACGAGGG 3036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583147304739080