Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq8506 143 8e-29 seq5421 132 1e-25 seq7195 127 6e-24 seq7887 111 5e-19 seq15565 89.7 2e-12 seq15243 89.7 2e-12 seq15208 89.7 2e-12 seq14883 89.7 2e-12 >seq8506 Length=12877 Score = 143 bits (158), Expect = 8e-29 Identities = 675/1059 (64%), Gaps = 20/1059 (2%) Strand=Plus/Minus Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 || || || |||||||| || || | ||||| || || ||||||||||| |||| Sbjct 3645 ACGGTCCCGGCCTATTTCAACGACTCGCAGCGCCAAGCGACCAAAGATGCTGGAGCCATT 3586 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || || || | || || || || ||||| ||||| || ||||| |||||| Sbjct 3585 GCTGGTCTGAACGTGCTGCGTATTATCAACGAGCCCACGGCTGCTGCGATTGCCTATGGG 3526 Query 349739 CTTGATA--AAATGA-GTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 | || | ||| || |||| | | ||| | || || || ||| | || || || Sbjct 3525 TTGGACAAGAAAGGAGGTGAGC------ACAATGTGCTGATCTTCGATCTTGGAGGCGGA 3472 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 || || || || || || || || ||||||| || || || || || || || || || Sbjct 3471 ACCTTCGACGTCTCGCTGCTTACCATTGAAGAAGGGATCTTCGAGGTCAAGGCGACAGCG 3412 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || || | || || ||||| || || || ||||| || | |||| || | Sbjct 3411 GGTGACACGCACTTGGGAGGTGAAGACTTCGACAACCGTCTGGTCGAGTATTTCGTGCAG 3352 Query 349916 GAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTA 349975 ||||| ||||| || | | ||||| | | | | || ||||||| || Sbjct 3351 GAATTCAAGCGCAAACACCACAAGGATATGACGGCGAGCCAGCGTGCTCTGCGTCGTCTT 3292 Query 349976 AGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAA 350035 | || ||||| || || | ||||| | || || || | | || | | ||||| Sbjct 3291 CGTACGGCGTGCGAGCGATCCAAGCGGACGTTGTCCACTTCGGCGCAGGCGTACATTGAG 3232 Query 350036 ATTGATTCTCTTGCT-GATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGA 350094 ||||| || || || ||||| | |||||| || | || |||||||| || || || Sbjct 3231 ATTGACTC-GTTACTGGATGGTATCGATTTCAACTCGACCATCACACGTGCGCGCTTCGA 3173 Query 350095 AGAATTATGTATGGATCTTTTTAGAGCA--ACAATGGATCCTGTGGAAAAAGTATTAAAA 350152 ||| | || | || || ||| ||| || |||||||| || | |||| || | Sbjct 3172 AGACCTGTGCAGCGA-CTATTT-CCGCAAGACGATGGATCCCGTTGCGCAAGTGTTGCGA 3115 Query 350153 GATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGT 350212 || | || ||||||| || ||| | | || | || | || || || || || || Sbjct 3114 GACTCTAAGCTGTCCAAGAACCAGGTGAACGAGATCGTCCTGGTCGGCGGCTCGACGCGG 3055 Query 350213 ATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATC 350271 || || || || || ||||| | || || || || ||||| || | ||| || || Sbjct 3054 ATCCCGAAGGTGCAGCAGTTGTTGATGGATTTCTTCAACGGCAAGGAGCTGTTCAAG-TC 2996 Query 350272 AATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGG 350331 || || || || ||||| || || || || || | || ||||| | ||||| ||| Sbjct 2995 CATCAACCCGGACGAAGCCGTCGCGTACGGCGCCACGGTGCAGGCGGCCATTTTGAGTGG 2936 Query 350332 AAATAAGAGTTCT--AAAATTG-ATGATCTATTACTACTAGATGTAACTCCACTTTCGCT 350388 || || ||| || ||| | || || ||||||| || || | || | || || Sbjct 2935 CAACGAGTCGTCTGCCAAGTTGCAGGACCTGCTACTACTGGACGTCGCGCCGTTGTCCCT 2876 Query 350389 TGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACC 350448 ||| | || || | |||| ||| ||||| || ||||| | || | || || || Sbjct 2875 CGGACTGGAGACGGCCGGTGGAGTCATGACCAAGCTCATTCCACGCAACACGACAGTCCC 2816 Query 350449 TACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCA 350508 | || ||| | || | || || || || || || || ||| | | || || || Sbjct 2815 GGCTAAGAAGACGCAGTCGTTCTCGACGTTCGCCGACAACCAGTCCGGCGTGTTGATCCA 2756 Query 350509 AGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCT 350568 || || || || || || | || ||||| || ||| || | || | ||| Sbjct 2755 GGTGTTCGAGGGCGAGCGCACCATGACGCGTGATAACCATCTACTGGGCAAGTTCAACCT 2696 Query 350569 AAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGA 350628 | || ||||| ||||| | || || || || ||||| || | ||||| |||| Sbjct 2695 GGACGGCATCCCACCGATGCCGCGCGGCGTGCCCCAAATTGACGTGACGTTCGACGTTGA 2636 Query 350629 TTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAATC 350667 | ||||| ||||| || || | || || || || || Sbjct 2635 TGTCAATGGCATTTTGAACGTGTCAGCCGTGGAGAAGTC 2597 >seq5421 Length=2020 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || || || || |||||||| || || || || ||||| Sbjct 917 CATGCCACCACGCAGACGCAGTACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAATC 858 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | ||| || ||||| ||||| || || ||||| || || || || ||||| ||||| Sbjct 857 ACTCAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGG 798 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || ||||| || |||||||| || || || || || ||||| || || || || Sbjct 797 CGGGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTC 738 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || ||||| || || || ||||||||||| Sbjct 737 CACGTCGAGCGTGATCGTCTTGCCCGTTAGCGTCTTCACGAAAATCTGCAT 687 >seq7195 Length=47515 Score = 127 bits (140), Expect = 6e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | ||||| || |||||||||||||| || || || || || || Sbjct 44587 CATGCCACCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTC 44528 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || || || || || || ||||| ||||| ||||| ||||| ||||| Sbjct 44527 GCTCAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGG 44468 Query 140627 AGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGGTT 140685 || || ||||| || ||||| || ||| |||| || || || ||||| || || || | Sbjct 44467 CGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTC-ACGTTGTCGATCGAGTCCGAAGGCT 44409 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || |||| ||||| || || | || || || ||||||||||| Sbjct 44408 CCACGTCCAGGGTAATCGTCTTGCCCGTCAAAGTCTTGACGAAAATCTGCAT 44357 Score = 116 bits (128), Expect = 1e-20 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || |||||||||||||| || || || || || || | || || || || Sbjct 44796 AGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 44737 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| ||||| ||||| ||||| ||||| || || ||||| || ||| Sbjct 44736 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 44677 Query 140646 TGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGT 140704 || || ||| || || || || || ||||| || || || || || || || |||| || Sbjct 44676 TGGATCTTTTGC-TTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGGGTAATCGT 44618 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || | || || || || |||||||| Sbjct 44617 CTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 44585 >seq7887 Length=10481 Score = 111 bits (122), Expect = 5e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || ||||| || || || ||||| || || || || || || || Sbjct 1226 ACCACCACGCAGACGCAGCACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 1167 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || || || || || || || ||||| ||||| ||||| ||||| || Sbjct 1166 CAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 1107 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || ||||| ||||| || ||||| ||||| || || || || || Sbjct 1106 GATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCAC 1047 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || | ||||| || || || || || || |||||||||||| Sbjct 1046 GTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATT 998 >seq15565 Length=1108 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 884 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 943 Query 74548 TCGGGCA 74554 ||||||| Sbjct 944 TCGGGCA 950 >seq15243 Length=1417 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 1139 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 1080 Query 74548 TCGGGCA 74554 ||||||| Sbjct 1079 TCGGGCA 1073 >seq15208 Length=1245 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 302 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 361 Query 74548 TCGGGCA 74554 ||||||| Sbjct 362 TCGGGCA 368 >seq14883 Length=3240 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 3100 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 3159 Query 74548 TCGGGCA 74554 ||||||| Sbjct 3160 TCGGGCA 3166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514952179195301