Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq10576 239 5e-58 seq5234 147 2e-30 seq7170 131 2e-25 seq10590 129 6e-25 seq5021 111 2e-19 >seq10576 Length=3682 Score = 239 bits (264), Expect = 5e-58 Identities = 497/731 (68%), Gaps = 12/731 (2%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||||| | ||| ||||||| ||| |||||||| || || || || |||||| Sbjct 2165 GAGACGTACGAGCTCATGTCGCAAAAGTTCTTCACGCACGCGACCCCTACTCTCTTCAAC 2106 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || ||| | |||||| |||| || ||||| |||| ||| ||||||||||| Sbjct 2105 GCCGGCACGCCACGTCCTCAGCTGTCTTCTTGTTTCCTATTGGCAATGCAGGATGACTCG 2046 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 ||||| ||||||||||| ||||||||| | || || ||| ||||||||| |||| ||| Sbjct 2045 ATCGAGGGCATCTACGACACGCTCAAGCAATGCGCGTGCATATCCAAGTGGGCGGGAGGT 1986 Query 53423 ATCGGTATC-CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 || || ||| ||| | ||| |||| || | | || ||| || ||||| || Sbjct 1985 ATTGGCATCAGTATGCAC-AACATCCGAGCCACCAACAGCTACATCCGCGGCACGAATGG 1927 Query 53482 CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAA 53541 | | || |||| || | || ||||| || || || ||| ||||||| || || || | Sbjct 1926 CTCCTCCAATGGCATTATCCCCATGCTGCGTGTGTTTAACGACACGGCTCGCTATGTGGA 1867 Query 53542 CCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGA 53601 |||||| || || |||||||| || || || || ||||| | ||||| |||||||| || Sbjct 1866 CCAGGGCGGAGGTAAGCGCAAAGGATCCTTTGCTATCTATTTGGAGCCATGGCACGCAGA 1807 Query 53602 CATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC---CG 53658 | | | ||||| || || ||||| ||| || || | | ||| ||| | || || Sbjct 1806 CGTGTTCGAGTTCCTGGATCTGCGCAAGAACCACGG---CAACGAGCTGCACCGCGCTCG 1750 Query 53659 TGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717 |||| |||| ||| || || ||| | || || ||||||||| | | |||||| | | Sbjct 1749 TGACTTGTTCTAC-GCGCTCTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAGGCCAATG 1691 Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAG 53776 ||||| || | || || ||||| || || ||| | | ||| || || || Sbjct 1690 GTAAGTGGAGTCTATTCTGTCCTAACGAAGCTCCTGGTCTCTACGAGTG-CTGGGGAGAC 1632 Query 53777 GAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAG 53836 |||||| | | | ||||| | ||||| | || ||| ||||| | || Sbjct 1631 GAGTTTGAAGCGCTGTATGAAAAGTACGAGAAGGAAGGACGCGCTCGGAAGACCATTAAC 1572 Query 53837 GCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATG 53896 || | || | ||| || ||||| | ||| | ||||||||| ||| | ||| Sbjct 1571 GCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAGATCGAGACGGGAGTGCCCTTTATG 1512 Query 53897 TGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCG 53956 ||||||||| | | |||| ||| |||||| ||||| | ||| ||| || Sbjct 1511 CTCTACAAGGACGCAGCCAACCGCAAGTCGAACCAGCAGAACCTGGGCACGATCCGCTCC 1452 Query 53957 AGCAACTTATG 53967 ||||||||||| Sbjct 1451 AGCAACTTATG 1441 Score = 152 bits (168), Expect = 6e-32 Identities = 304/447 (68%), Gaps = 5/447 (1%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 || || |||||||| ||||| || || || ||||| || ||||| || ||||||||| || Sbjct 953 GGTCTTCGCAACTCACTGCTGGTTGCACCGATGCCGACGGCGTCCACAGCTCAGATCCTG 894 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 |||||||| ||| | ||||||| |||||| ||||||| ||| ||||| || || Sbjct 893 GGCAACAATGAGTCCATCGAGCCTTACACGTCCAACATGTACAACCGCCGTGTGCTGGCC 834 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657 || |||||| || |||||||| |||| | ||||| || || | | ||| Sbjct 833 GGCGAGTTTACGATCGTCAACAAGTACCTGATGAAGGAGCTTATTGAGCTGGGAATCTGG 774 Query 55658 A-ACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGAG-- 55714 | ||| | || | | | ||| | |||| || || || ||||| | || Sbjct 773 ACACCAGAAGTACGTAATC-AGATTCTAAATGACGGTGGATCTGTGCAGAAGGTCAAGGC 715 Query 55715 -ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCT 55773 ||||| | ||||||| | ||| || ||||||||||| ||||||| | Sbjct 714 CATTCCAGACCACGTCAAGGACAAGTACAAAACTGTGTGGGAGATCAAACAGAAGGCCGT 655 Query 55774 GATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTT 55833 | | || || ||||| ||||| || |||||| |||| ||||||||||||||| Sbjct 654 GCTGGATCTGTCGGCTGACCGTGGCGCTTACATCTGCCAGAGTCAGTCTCTGAACATCCA 595 Query 55834 CATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 ||| | | || | | ||| | | || |||||||| |||| ||||||||||| Sbjct 594 CATCGCTGACCCGACTATCAGCAAACTCACGTCCATGCACTTCTACGCCTGGAAGAAGGG 535 Query 55894 ACTCAAGACGGGTATGTACTATCTGCG 55920 ||||||||| || |||||||| |||| Sbjct 534 ACTCAAGACCGGCATGTACTACATGCG 508 >seq5234 Length=8456 Score = 147 bits (162), Expect = 2e-30 Identities = 320/468 (68%), Gaps = 11/468 (2%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || |||||||| || ||||||||||| | ||| ||||||| ||||||||||| |||| Sbjct 5450 AGTCCAGGCATGAGGCCACGCTTCTTAAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAG 5391 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG-CATCGGAAG- 74922 |||||||| || || ||||| || | || || | || | | | | || || | Sbjct 5390 AAGATGCCCTCAACGGCAGCAAAAGCCAGTAGACGCTCCGGGTAGGAGGACACACGAGGG 5331 Query 74923 TCAT-CCAAGTCTGAGCCCATTCAGCTTT--TCGTTTGACCGCAGGGACAG-TATCGATC 74978 || ||| | | ||||| | ||||| |||| ||| ||| ||| | | || ||| Sbjct 5330 TCGCACCACTTGAGCGCCCAGTGTGCTTTCTTCGT--GAC-GCACGGAATGGTCTCAATC 5274 Query 74979 GCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAG 75038 || | || || ||||||| | |||||||| | | ||||||| | |||||| Sbjct 5273 GCACGCAACAGATGATCCTTCTCGATCGCATCCTTGATGTACGTGTCAATGAGCAGTGAG 5214 Query 75039 TACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTC 75097 || |||||| || || |||| || ||| |||| | ||||||| | || ||||| Sbjct 5213 TAGACCTCCGAGTGGATGTTCTCGATGG-CGATCTGGAATCCGTAGAAGCATCGAGCCTC 5155 Query 75098 TGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGA 75157 | | ||| || || || || |||||| | | ||||| | ||||| ||||| Sbjct 5154 AGGCACCTGCACTTCATTACTGAAGTTCATGGCCAAGTTCTCGTTCACGATTCCGTCGCT 5095 Query 75158 GGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTC 75217 ||| ||||| || || || || ||||| ||||||||||| | ||| || || ||| Sbjct 5094 GGCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTAAGCTTGGT 5035 Query 75218 CCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 ||||||||| ||||| | ||| || |||||||| | |||||||| Sbjct 5034 CCAATCCTTGAGGTCGTGCACCAGGTCGATCTCCTCAGCAGTCCAGAA 4987 >seq7170 Length=26371 Score = 131 bits (144), Expect = 2e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| ||||| || | |||||||||||||||||| || ||| ||||| || ||||| Sbjct 10906 GTGAAAATGTACCGAGCGCTGGCCGCATCCTTGCCGCCCATCAGACGCGTACCGAACTGA 10847 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||| || |||| || ||||||| || ||||| | ||| |||| |||||| Sbjct 10846 CCGATGGGGGACAGAAGGTGGATGTTGTTGCTACCAACGAAGTCCTGCGCCATATTCACG 10787 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || |||||| |||||| |||||||||||| || || | ||||| | | ||| || Sbjct 10786 ATACAGCCCTGTAGACTCTGTTCACCGTGGTGGTATGCAGAGTGCTCAGACACGTAACCA 10727 Query 152209 GCCAACTGCGCCACCTTCATGTCCG 152233 |||| ||| |||||||| | |||| Sbjct 10726 GCCAGCTGTGCCACCTTGAGCTCCG 10702 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||||||||| |||| ||| || ||||||||||| || |||||||||||||| || Sbjct 10906 GTGAAAATGTACCGAGCGCTGGCCGCATCCTTGCCGCCCATCAGACGCGTACCGAACTGA 10847 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | || || |||| | ||||||| || || |||| || |||| || || Sbjct 10846 CCGATGGGGGACAGAAGGTGGATGTTGTTGCTACCAACGAAGTCCTGCGCCATATTCACG 10787 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || || ||| ||||| ||||| || || | ||||| | |||||| || Sbjct 10786 ATACAGCCCTGTAGACTCTGTTCACCGTGGTGGTATGCAGAGTGCTCAGACACGTAACCA 10727 Query 117485 GCCAGCTGAGCCACCTT 117501 |||||||| |||||||| Sbjct 10726 GCCAGCTGTGCCACCTT 10710 >seq10590 Length=17674 Score = 129 bits (142), Expect = 6e-25 Identities = 193/274 (70%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 152027 GCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 |||||||||||||||| | || || ||||||||||||||| || || || ||||||| Sbjct 11404 GCGTGAAGATGTATCGAGGACTAGCAGCATCCTTGCCACCTTGTAGTCGAGTACCAAACT 11345 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | || || || | | || ||||||||| | ||||| || | ||| |||| || | Sbjct 11344 GACCTGACGGATACAATAGCGGGAGGTTGTTAGATCCCACAAAGTCCTGCGCCATGTTGA 11285 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 ||||||| |||| ||||| ||||| ||||| ||||| ||||| | ||| | Sbjct 11284 CAATCGTCGAGTGCAATGAAGCTTCTCCGTGATGATAAGCCGTGTGCTCGCTGCAGTAAC 11225 Query 152207 CCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCA 152266 | |||| ||| ||||| |||| || | || || || ||| | ||| ||| ||| | Sbjct 11224 CTGCCAGCTGGGCCACTTTCACCTCGCTTGTAAGCTTGCGCTTCATACACGCGAAAAGAA 11165 Query 152267 CCTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300 |||| ||||| || || | ||| || ||||| Sbjct 11164 CCTTCCGCTGCGAGATCTTGAGACCATCAACCAC 11131 Score = 109 bits (120), Expect = 6e-19 Identities = 289/434 (67%), Gaps = 18/434 (4%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 ||||| ||||||||||| |||||||||| || | ||| || | ||| |||||| || Sbjct 11555 CCAGTACCGATACCCTCCGCACCATTCACGAGCAACATTGGGATAGTAGGCACGTAGTAC 11496 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCAC--TCG 117269 ||||||| || | | || || || | |||| | || ||| | || ||| Sbjct 11495 ACAGGCTCAACTGGGAAGCCATCATCGTCGGCGTAGCGTAACAGCGCGTCATCTTCTTCG 11436 Query 117270 GATCGAATATGTTCTTGGTCCACG-GTGCT-----AGGCGAGTGAAAATGTAACGAGAGC 117323 | ||||| | || | || ||||| || | ||||| ||||| |||| | Sbjct 11435 GG--GAATA----CCAGG--CGCGTGTGCTTTTGAAGCAGCGTGAAGATGTATCGAGGAC 11384 Query 117324 TTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGT 117383 | ||||||||||||||||| || || ||||| || || || ||| | ||| || Sbjct 11383 TAGCAGCATCCTTGCCACCTTGTAGTCGAGTACCAAACTGACCTGACGGATACAATAGCG 11324 Query 117384 TCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCG 117443 |||||||| | |||||||||| || |||| |||||||||||| || | | Sbjct 11323 GGAGGTTGTTAGATCCCACAAAGTCCTGCGCCATGTTGACAATCGTCGAGTGCAATGAAG 11264 Query 117444 CCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCCCGCCAGCTGAGCCACCTTC 117502 | || || || ||||| ||||| ||||| | || ||| || |||||||| ||||| ||| Sbjct 11263 CTTCTCCGTGATGATAAGCCGTGTGCTCGCTGCA-GTAACCTGCCAGCTGGGCCACTTTC 11205 Query 117503 ATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTC 117562 | || || || || ||| | || || ||| ||||| ||||| ||| Sbjct 11204 ACCTCGCTTGTAAGCTTGCGCTTCATACACGCGAAAAGAACCTTCCGCTGCGAGATCTTG 11145 Query 117563 AGACCATCCGCCAC 117576 |||||||| |||| Sbjct 11144 AGACCATCAACCAC 11131 >seq5021 Length=14437 Score = 111 bits (122), Expect = 2e-19 Identities = 243/362 (67%), Gaps = 3/362 (1%) Strand=Plus/Minus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 ||| | ||| | |||||| || | || || ||| || ||| ||| ||||||||| || Sbjct 5208 CGCGAGCTCTACAAACTCGCGCACACTATGGCACTCTCCAGTGGCAACCACGAAATCCTC 5149 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 ||| | ||||| | |||| |||||||| || |||||||| ||||| ||||| Sbjct 5148 GGGGGTGTCGTGCTGTAGCATACGCCACATGCATTCCACGTAGTCGCGCGCGTGGCCCCA 5089 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCTTGGC-CGTCTTGTTCCACTCCG 124659 ||||||||||||||| ||||| || | || |||| | || | || | | || Sbjct 5088 GTCGCGCTTGGCATCAAGGTTGCCTACGAAGAGGCACTTGTCGATTCCAGCTCGAATACG 5029 Query 124660 --CCAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTG 124717 ||| | | || || || || || ||||| | |||||||| | |||||| Sbjct 5028 CACCACGGCTCGGGTGATTTTACGAGTGACAAAGGTTGGTCCGCGTCGAGGACTCTCGTG 4969 Query 124718 GTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCAT 124777 ||| || ||||| ||| || || |||| ||||| | ||||| | |||| | | Sbjct 4968 GTTAAATAGAATCCCATTAACGGCGTACATACCGTAGGCTTCGCGATGGTTTACCACACT 4909 Query 124778 CCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837 |||| | |||| |||| | ||| |||||||| || || | |||||| |||| || Sbjct 4908 CCAAAAGGCAAATTGCTTTGCCACCCCATAGGGTGAACGTGGATGGAATGGCGTGTCCTC 4849 Query 124838 AT 124839 || Sbjct 4848 AT 4847 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTG 159002 ||||||||| | || || ||||||||| |||| ||| || ||||| || | || Sbjct 5196 AAACTCGCGCACACTATGGCACTCTCCAGTGGCAACCACGAAATCCTCGGGGGTGTCGTG 5137 Query 159003 TTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGC 159062 || ||||| |||||||| || ||||| || ||||||| ||||||||||||||||| Sbjct 5136 CTGTAGCATACGCCACATGCATTCCACGTAGTCGCGCGCGTGGCCCCAGTCGCGCTTGGC 5077 Query 159063 ATCCATGTTCCC 159074 ||| | ||| || Sbjct 5076 ATCAAGGTTGCC 5065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547109518606600