Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_028785.1 Length=72790 Score E Sequences producing significant alignments: (Bits) Value seq10399 134 6e-27 >seq10399 Length=21380 Score = 134 bits (148), Expect = 6e-27 Identities = 388/590 (66%), Gaps = 18/590 (3%) Strand=Plus/Plus Query 64121 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 64180 || |||||||| ||||||||||| || || || ||| | || ||| | | | Sbjct 7210 CGTGTGGTGGAGATCTACGGCCCCGAGAGCTCCGGCAAGACGACGCTGGCTTTGAGCTGC 7269 Query 64181 GTGGCCAATGCGCAGAAGGCCG---GTGGCAACGCCGCCTACATCGACGCTGAGCACTCC 64237 | || | || |||||| ||| |||| | |||| ||||| || |||||| | Sbjct 7270 ATCGCTGAGGCTCAGAAGACCGAGGGTGGAGTCTGTGCCTTTATCGATGCAGAGCACGCT 7329 Query 64238 CTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTG-GTGGTTCA 64296 | ||| | | ||||||||||| || || ||||| | ||| ||| || || || Sbjct 7330 ATTGACGCCCACTACGCCAAGGCTCTGGGGGTGGATATTGACG-CCTTGTATGTCTCGCA 7388 Query 64297 GCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCT 64356 ||| ||| | || ||| | || |||||||||| ||| ||| || ||||| |||| Sbjct 7389 GCCAGACTCCGGGGAGGAAGCTCTGGAGATCGCAGACACGCTCATCCGATCTGG--AGCT 7446 Query 64357 GTCCA--TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 64414 || | |||| || | ||| |||||| || ||||||||||| || ||||||||||| Sbjct 7447 GTAGACCTCGTGGTGCTGGACAGTGTGGCAGCTCTGGTGCCGCGTGCGGAGCTCGAAGGT 7506 Query 64415 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAG 64474 || || || ||| || | | ||||| ||||| || ||| ||||| |||| ||| Sbjct 7507 GAAATGGGAGACCAGCAGATTGCTCTGCAGGCGCGACTTATGAGTCAGGCTCTGCGTAAG 7566 Query 64475 CTCACCGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGC 64531 | ||||| | | |||| |||| ||| | | ||| | |||||| | ||| Sbjct 7567 TTGACCGGGTCATTGTCCAAGTCCAACTGCACCATTA---TCTTCCTGAACCAGATCCGC 7623 Query 64532 GAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTG 64591 |||| | |||| | | || || | |||| || |||| || | ||| || Sbjct 7624 CAGAAAGTGGGCATCAT---CTTTGGATCACCCGAGGTGACGTCGGGTGGTACGGCGTTA 7680 Query 64592 AGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGAT 64651 | | ||||| ||||| || ||||| |||| || | | || |||||||| ||| Sbjct 7681 CGCTATTACGCGTCAGTGCGGTTGGATATCCGCCGTAAGACGGCCATCAAGGAAGGTGAT 7740 Query 64652 GAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGC 64701 ||| ||| |||||| || ||| || || | |||||||||| |||| Sbjct 7741 CAGGTTGTTGGCAACGAGACTGTGGTCAAAGTGGCCAAGAACAAGTTGGC 7790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232759031922137