Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq10399 138 5e-28 >seq10399 Length=21380 Score = 138 bits (152), Expect = 5e-28 Identities = 389/590 (66%), Gaps = 18/590 (3%) Strand=Plus/Plus Query 66150 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 66209 || |||||||| ||||||||||| || || || ||| | || ||| | | | Sbjct 7210 CGTGTGGTGGAGATCTACGGCCCCGAGAGCTCCGGCAAGACGACGCTGGCTTTGAGCTGC 7269 Query 66210 GTGGCCAATGCCCAGAAGGCCG---GTGGCAACGCTGCCTACATCGACGCTGAGCACTCC 66266 | || | || |||||| ||| |||| | ||||| ||||| || |||||| | Sbjct 7270 ATCGCTGAGGCTCAGAAGACCGAGGGTGGAGTCTGTGCCTTTATCGATGCAGAGCACGCT 7329 Query 66267 CTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTG-GTGGTTCA 66325 | ||| | | ||||||||||| || || ||||| | ||| ||| || || || Sbjct 7330 ATTGACGCCCACTACGCCAAGGCTCTGGGGGTGGATATTGACG-CCTTGTATGTCTCGCA 7388 Query 66326 GCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCT 66385 ||| ||| | || ||| | || |||||||||| ||| ||| || ||||| |||| Sbjct 7389 GCCAGACTCCGGGGAGGAAGCTCTGGAGATCGCAGACACGCTCATCCGATCTGG--AGCT 7446 Query 66386 GTCCA--TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 66443 || | |||| || | ||| |||||| || ||||||||||| || ||||||||||| Sbjct 7447 GTAGACCTCGTGGTGCTGGACAGTGTGGCAGCTCTGGTGCCGCGTGCGGAGCTCGAAGGT 7506 Query 66444 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAG 66503 || || || ||| || | | ||||| ||||| || ||| ||||| |||| ||| Sbjct 7507 GAAATGGGAGACCAGCAGATTGCTCTGCAGGCGCGACTTATGAGTCAGGCTCTGCGTAAG 7566 Query 66504 CTCACCGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGC 66560 | ||||| | | |||| |||| ||| | | ||| | |||||| | ||| Sbjct 7567 TTGACCGGGTCATTGTCCAAGTCCAACTGCACCATTA---TCTTCCTGAACCAGATCCGC 7623 Query 66561 GAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTG 66620 |||| | |||| | | || || | |||| || |||| || | ||| || Sbjct 7624 CAGAAAGTGGGCATCAT---CTTTGGATCACCCGAGGTGACGTCGGGTGGTACGGCGTTA 7680 Query 66621 AGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGAT 66680 | | ||||| ||||| || ||||| |||| || | | || |||||||| ||| Sbjct 7681 CGCTATTACGCGTCAGTGCGGTTGGATATCCGCCGTAAGACGGCCATCAAGGAAGGTGAT 7740 Query 66681 GAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGC 66730 ||| ||| |||||| || ||| || || | |||||||||| |||| Sbjct 7741 CAGGTTGTTGGCAACGAGACTGTGGTCAAAGTGGCCAAGAACAAGTTGGC 7790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240914284391100