Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq12351 161 9e-35 >seq12351 Length=7116 Score = 161 bits (178), Expect = 9e-35 Identities = 331/492 (67%), Gaps = 0/492 (0%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 ||||| ||||||||||| || | || | |||| || |||| ||||||||| |||||| Sbjct 4685 TTTCCACTGCTGACGACCAAGAGGGTCTTCTGGCGAGGTGTGGCCGAGGAGCTACTGTGG 4744 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 ||| | || || | ||||| | | | | | | | | ||||||||| Sbjct 4745 TTCATCAGTGGCGACACGAGTGCAGACACGTTGCAGCAGAAAGATATCCACATCTGGGAC 4804 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGAC 34399 | | || || || || | |||| | || || | || |||||| | || ||| Sbjct 4805 GGCAATGGATCGCGCGAGTACTTGGATAGTCGAGGACTGCCGAATCGGGAAGTTGGGGAC 4864 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459 | || ||||| ||||| ||||||||| | |||||||| || |||| || | | Sbjct 4865 CTTGGACCGGTTTACGGCTTCCAGTGGCGTCACTTTGGTGCCAAGTACACGGACATGCAT 4924 Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG 34519 |||||||| | || || || | |||||| || | | ||||| ||| || | Sbjct 4925 GCGGACTACACTGGCCAAGGGGTGGACCAACTTGCGGAGGTGATTCACAAGCTGCGTACG 4984 Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 || || |||| || |||| || ||| |||||||||||| |||||| |||| Sbjct 4985 AATCCGACTGACCGACGGATTGTCCTGTCGGCGTGGAACCCGGCTGATCTCAACGAGATG 5044 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGC 34639 || || || || ||||||| ||||||| |||||||| || | ||||| | || ||| Sbjct 5045 GCACTGCCACCTTGCCACATGTTCTGCCAGTTCTACGTGGCCGACGGGGAATTATCGTGC 5104 Query 34640 CAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTAC 34699 ||| | || || || |||| |||||||| | || ||||| |||||||| || || ||| Sbjct 5105 CAGATGTACCAGCGTTCGGCCGACATGGGACTTGGCGTGCCATTCAACATCGCCAGCTAC 5164 Query 34700 GCTCTGCTCACG 34711 || ||||| ||| Sbjct 5165 GCGCTGCTGACG 5176 Score = 161 bits (178), Expect = 9e-35 Identities = 331/492 (67%), Gaps = 0/492 (0%) Strand=Plus/Minus Query 6634 CGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCG 6693 ||| ||||| ||||| || || |||||||| ||||| || | |||||||| |||| || Sbjct 5176 CGTCAGCAGCGCGTAGCTGGCGATGTTGAATGGCACGCCAAGTCCCATGTCGGCCGAACG 5117 Query 6694 TTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCA 6753 || || | |||||| || | ||||| | || |||||||| ||||||| ||||||| Sbjct 5116 CTGGTACATCTGGCACGATAATTCCCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCA 5057 Query 6754 CGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCT 6813 || || || |||||| |||||| |||||||||||| ||| || |||| || Sbjct 5056 AGGTGGCAGTGCCATCTCGTTGAGATCAGCCGGGTTCCACGCCGACAGGACAATCCGTCG 4997 Query 6814 GTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCC 6873 |||| || ||| || ||| ||||| | | || |||||| | || || || Sbjct 4996 GTCAGTCGGATTCGTACGCAGCTTGTGAATCACCTCCGCAAGTTGGTCCACCCCTTGGCC 4937 Query 6874 CGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTA 6933 | |||||||| | | || |||| || |||||||| | ||||||||| ||||| Sbjct 4936 AGTGTAGTCCGCATGCATGTCCGTGTACTTGGCACCAAAGTGACGCCACTGGAAGCCGTA 4877 Query 6934 GACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCG 6993 ||||| || | ||| || | |||||| || | || || | |||| | || || Sbjct 4876 AACCGGTCCAAGGTCCCCAACTTCCCGATTCGGCAGTCCTCGACTATCCAAGTACTCGCG 4817 Query 6994 AGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGC 7053 || || | |||||||||| | | | | | | | | ||||| | Sbjct 4816 CGATCCATTGCCGTCCCAGATGTGGATATCTTTCTGCTGCAACGTGTCTGCACTCGTGTC 4757 Query 7054 CCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGT 7113 || || | ||||||||| ||||||||| |||| || |||| | || | || ||||| Sbjct 4756 GCCACTGATGAACCACAGTAGCTCCTCGGCCACACCTCGCCAGAAGACCCTCTTGGTCGT 4697 Query 7114 CAGCAGCGGAAA 7125 |||||| ||||| Sbjct 4696 CAGCAGTGGAAA 4685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448175173740240