Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq9710 111 1e-19 seq5421 107 2e-18 seq7887 95.1 1e-14 >seq9710 Length=10376 Score = 111 bits (122), Expect = 1e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 ||||| || || || || | || || || |||| |||||||| ||||| || || || Sbjct 866 TTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATC 925 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216 |||||||||||||| | || | | || |||||| ||||||||| |||| | | | | Sbjct 926 AGACGCTGCTGGTCAGGCGGGATTCCYTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTC 984 Query 39217 ACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 | | | ||| || ||||||||||| |||||| | || ||||||| || || ||||| Sbjct 985 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAA 1044 Query 39276 GATTTGCAT 39284 ||| ||||| Sbjct 1045 GATCTGCAT 1053 >seq5421 Length=2020 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || |||||| ||| || || || || || ||| || || || | || || Sbjct 1352 CACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTC 1293 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| || || ||||| ||||||||||| | || | || || |||||| Sbjct 1292 AAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTG 1233 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||||| || | ||| | | | || || || ||||||||| | |||||| | | Sbjct 1232 AATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCT 1174 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||||||| || |||||||| ||||| Sbjct 1173 TGCCCGTCAGCGTCTTCACAAAGATCTGCAT 1143 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || |||||| ||| || || || || || ||| || || || | || || Sbjct 1124 CACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTC 1065 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| || || ||||| ||||||||||| | || | || || |||||| Sbjct 1064 AAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTG 1005 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||||| || | ||| | | | || || || ||||||||| | |||||| | | Sbjct 1004 AATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCT 946 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| ||||| || || ||||| ||||| Sbjct 945 TGCCCGTTAGCGTCTTCACGAAGATCTGCAT 915 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || ||||| ||| || || || || ||||| ||||| || | || ||| Sbjct 895 ACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAATCACTCAGTGTGCGGCCATCCTCA 836 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| || || || || ||||||||||| | || | || || |||||| Sbjct 835 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGA 776 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || ||||| || | ||| | | | || || || ||||||||| | |||||| | || Sbjct 775 ATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTT 717 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||| ||||| || || || || |||||||| Sbjct 716 GCCCGTTAGCGTCTTCACGAAAATCTGCATCTT 684 >seq7887 Length=10481 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || | || || || |||| || ||||| ||||| || || Sbjct 1190 CTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1131 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||| | || | || ||| |||||| ||||||||| |||| | | Sbjct 1130 GATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CAT 1072 Query 39213 CGCCACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | || | | || || ||||||||| | |||||| | || ||||| || || || | Sbjct 1071 TGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGA 1012 Query 39272 CAAAGATTTGCATCTT 39287 | || || ||||| || Sbjct 1011 CGAAAATCTGCATTTT 996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429464105400671