Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq6779 127 2e-24 >seq6779 Length=4860 Score = 127 bits (140), Expect = 2e-24 Identities = 297/446 (67%), Gaps = 8/446 (2%) Strand=Plus/Plus Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599 ||| ||| ||||| ||||| |||| || || || | || |||| ||||| || | Sbjct 657 ACATTAAGCACGCGAAATCCGTGTGCATGCCCTCATCACGACTGATCATCTCGTTTGAGA 716 Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAG 4659 | | | || ||||| | ||| | ||| |||||||| || | | ||||||||| | Sbjct 717 AGCTCAGACCAGGCATAAGACCGCGCTTCTTAAGCCAGAAAACGGAACAAAATGACCCCG 776 Query 4660 AAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAG----CTG 4715 ||||||| || ||||| || || || ||||||| | || || |||| | Sbjct 777 AAAAGAAGATACCTTCCACTGCAGCGAACGCTAGCAGACGCTCTGCGTACGACGACACAC 836 Query 4716 GCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTG 4775 || ||| | |||||||| |||||||| || || |||| || || || || || Sbjct 837 GCGG-GTC---ACACCATTTTAGCGCCCAGTTGGCCTTCTTCTGGACACATGGGATAGTC 892 Query 4776 TATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGT 4835 | ||||| | || | ||| || | | ||| | || || ||||| || || Sbjct 893 TCGATAGCACGTAGCAAGTGGTCTTTCTCCACGGCGTCCTTGATGTATGTGTCAATAAGC 952 Query 4836 AGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTA 4895 || ||||| || || || ||||| || ||||| ||||| || ||||| ||||| | | Sbjct 953 AGCGAATACACCTCCGAGTGGATATTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGA 1012 Query 4896 GCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCG 4955 ||||| | || || ||||| |||| || | | | ||| ||||| || |||||| Sbjct 1013 GCTTCCGGTATCTGCACTTCATTACTGAAGTTCATGGCCAGGTTCTCGTTGACGATACCG 1072 Query 4956 TCACTGGCTGCAAAAAACGCCAAAAC 4981 ||||| || || || ||||||| ||| Sbjct 1073 TCACTAGCAGCGAAGAACGCCAGAAC 1098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426968578948811