Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6779 114 2e-20 >seq6779 Length=4860 Score = 114 bits (126), Expect = 2e-20 Identities = 369/565 (65%), Gaps = 15/565 (3%) Strand=Plus/Plus Query 48133 ACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAA 48192 ||||||| || || ||||| || | || ||||| | ||| || | ||||| || | Sbjct 657 ACATTAAGCACGCGAAATCCGTGTGCATGCCCTCATCACGACTGATCATCTCGTTTGAGA 716 Query 48193 ATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 | | ||||| ||||| || || || || || ||||| || | | || || || | Sbjct 717 AGCTCAGACCAGGCATAAGACCGCGCTTCTTAAGCCAGAAAACGGAACAAAATGACCCCG 776 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGT 48312 ||||||| || ||||| || || || || || || | |||| |||| | | Sbjct 777 AAAAGAAGATACCTTCCACTGCAGCGAACGCTAGCAGACGCTCTGCGTACGACGACACAC 836 Query 48313 TGTGTATC-CACCGTTGT---GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCT 48368 | | || |||| || | ||||| | |||||||||| ||||| || || || || Sbjct 837 -GCGGGTCACACCATTTTAGCGCCCAGTTGGCCTTCTTCTGGACACATGGGATAGTCTCG 895 Query 48369 ATAGCAT-TA--AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAA 48425 |||||| || ||| | || ||| || | || || | ||| || || || | Sbjct 896 ATAGCACGTAGCAAGTG---GTCTTTCTCCACGGCGTCCTTGATGTATGTGTCAATAAGC 952 Query 48426 AGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTC 48485 || ||||| || ||||| ||||| || || || ||||| || ||||| || || | Sbjct 953 AGCGAATACACCTCCGAGTGGATATTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGA 1012 Query 48486 GCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA--GCCAAATTCTCATTTACTATTC 48543 ||||| | ||||| || || ||| || ||||| |||| ||||| || || || | Sbjct 1013 GCTTCCGGTATCTGCACTTCATTACTGAA--GTTCATGGCCAGGTTCTCGTTGACGATAC 1070 Query 48544 CATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA 48603 | ||||||||||| || || || | || | || || || | |||||| || | Sbjct 1071 CGTCACTAGCAGCGAAGAACGCCAGAACGTACTTGATGAAGTGACGCTCGTTGTCTGTGA 1130 Query 48604 GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATG 48663 |||| |||||| |||| ||| | | || | || || || ||||| || || | Sbjct 1131 GTTTTGCCCAGTCGTTGAGATCGTGCACCAGRTCCAGCTCCTCGGCCGTCCAGAAGGAGG 1190 Query 48664 CCTCTGCTTTTTTATACATATTCCA 48688 |||| || || || ||||| | ||| Sbjct 1191 CCTCCGCCTTCTTGTACATCTGCCA 1215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694533626134880