Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq7887 163 3e-35 seq5421 163 3e-35 seq7195 141 9e-29 seq9710 134 1e-26 seq13260 102 8e-17 seq7380 84.2 2e-11 >seq7887 Length=10481 Score = 163 bits (180), Expect = 3e-35 Identities = 178/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || ||||| | ||| || ||||| || ||||||||| ||||| ||||| Sbjct 1228 CCACCACCACGCAGACGCAGCACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCC 1169 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || ||||| |||| |||||||||||||||||||| ||||| ||||| ||||| | Sbjct 1168 GACAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGC 1109 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTC 41811 || | || |||||||||| |||||| ||||| || | || | |||| || ||| Sbjct 1108 GGGATGCCCTCCTTGTCCTGGATTTTCTGCTT-GACATTGTCAATGCTGTCCGACGGCTC 1050 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| || | ||| || || || ||||| || ||||| |||||||||||||| || Sbjct 1049 CACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 996 >seq5421 Length=2020 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | |||||| ||||||||| ||||||||| ||||| |||||| Sbjct 1369 CCGCCGCGAAGACGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTC 1310 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||| ||||| || |||||||| ||||| | || Sbjct 1309 AGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCGGG 1250 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| || || |||||| ||| | | | | ||| || |||||| Sbjct 1249 ATGCCTTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 1191 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | ||| ||||| || |||||||||||||| || || ||||||||| Sbjct 1190 GTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 1142 Score = 156 bits (172), Expect = 4e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| ||||||||| ||||||||| ||||| |||||| Sbjct 1142 GCCACCACGCAGACGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGCT 1083 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||||||||| ||||| || |||||||| ||||| | || Sbjct 1082 CAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCAGGCGG 1023 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| || || |||||| ||| | | | | ||| || ||||| Sbjct 1022 GATGCCTTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCA 964 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | ||| ||||| || ||||| |||||||| ||||| ||||||||| Sbjct 963 CGTCGAGCGTGATCGTCTTGCCCGTTAGCGTCTTCACGAAGATCTGCATG 914 Score = 149 bits (164), Expect = 6e-31 Identities = 176/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| |||||||| ||||||||| ||||| || || Sbjct 914 GCCACCACGCAGACGCAGTACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAATCACT 855 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 854 CAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 795 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| || || |||||| ||| | | | | ||| || ||||| Sbjct 794 GATGCCTTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCA 736 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCG 41869 | || | ||| ||||| || ||||| |||||||| |||||||||||||| || ||| Sbjct 735 CGTCGAGCGTGATCGTCTTGCCCGTTAGCGTCTTCACGAAAATCTGCATCTTCTCG 680 >seq7195 Length=47515 Score = 141 bits (156), Expect = 9e-29 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| || || || ||||||||| ||||| |||||| Sbjct 44584 GCCACCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 44525 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || |||||||| || ||||| ||||| ||||| ||||| | || Sbjct 44524 CAGCGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 44465 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||| |||||||||| || | | | | ||| | ||||| Sbjct 44464 GATGCCTTCCTTGTCCTGGATCTTTTGCTTCA-CGTTGTCGATCGAGTCCGAAGGCTCCA 44406 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | |||| || ||||| || ||||||| ||||| |||||||||||||| || Sbjct 44405 CGTCCAGGGTAATCGTCTTGCCCGTCAAAGTCTTGACGAAAATCTGCATCTT 44354 >seq9710 Length=10376 Score = 134 bits (148), Expect = 1e-26 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 |||| || ||||| ||||| ||||| ||||| |||| || ||||||||||||||||| | Sbjct 864 CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 923 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||| ||||| | || | | ||||||||| |||||| ||||| || | Sbjct 924 TCAGACGCTGCTGGTCAGGCGGGATTCCYTCCTTGTCCTGGATTTTCTGCTT-GACATTG 982 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | ||||| || |||||| |||| ||| || || || ||||||| ||||| || Sbjct 983 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 1042 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 1043 AAGATCTGCATG 1054 >seq13260 Length=2999 Score = 102 bits (112), Expect = 8e-17 Identities = 96/121 (79%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | ||||| |||||||| ||||||||| ||||| ||||| Sbjct 128 CCGCCGCGAAGACGCAGTACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTC 69 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 || ||||| | || || ||||||||||| ||||| ||||||||||| ||||| ||||| Sbjct 68 AGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 9 Query 41755 A 41755 | Sbjct 8 A 8 >seq7380 Length=4531 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 85788 GGCTGCTACATTCGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTG 85847 ||||||||| ||| | || ||||| || ||||||||| | ||| | ||||| | Sbjct 1542 GGCTGCTACGCACGTGTAGCCCCTCGCTCAGGCCTCGCCTGGAAGAAATTCATCGATACG 1601 Query 85848 GGCGCCGGGGTCATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCA 85906 ||||| || ||||||||||||||||||||||| ||||| | | | || |||||||| Sbjct 1602 GGCGCTGGCGTCATCGACGCCGACTACCGCGGCAACGTGGGCGTGATTCTGTTCAACCA 1660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462214041420400