Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq17601 129 1e-24 seq13047 125 2e-23 seq14701 111 3e-19 seq16526 105 1e-17 seq17284 91.5 3e-13 >seq17601 Length=1722 Score = 129 bits (142), Expect = 1e-24 Identities = 453/694 (65%), Gaps = 35/694 (5%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 791 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAG 732 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 731 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 672 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || ||| | || | |||| | ||||| |||| ||| || || || Sbjct 671 CTTCCACACCTGTCCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 612 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAG------CGATACCTG 319223 || || |||||||| ||| | |||| |||| | | | ||| || ||| Sbjct 611 CTTACCGGCACCGTTGGGGCCAAGCACAGCGATACGGCTGGACAGAGCGCACGTCACCGA 552 Query 319224 GGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGC 319282 | || |||| || | | | || ||||| || |||| | | | || Sbjct 551 GATGTT---GTTGATCGACG----GCTTGGGGGTACCAGGGTACTGGTA-CGAGCAGTTG 500 Query 319283 GT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGG 319341 || || ||||||| |||| |||| | | ||||| || ||||| ||| Sbjct 499 GTCAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCCGGG 440 Query 319342 AAC-----TTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGAC 319396 ||| | ||||| ||| || ||| || ||||||| | | ||||| Sbjct 439 AACGTGAACTTCACGTTGTC--CGACTC---CAGCTCGTAGTAGGCCTTGGCCTCGGGCT 385 Query 319397 GCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGT 319456 || || ||||| || || || |||||||| |||||||||| || | |||| Sbjct 384 TCTGCTCAACGAAGAGAGAAAGGTTACCCTTGTAGATCTTCAGCTTACGG---GTCTCGT 328 Query 319457 AATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGC 319516 | |||||||| ||| || || ||||||||| ||||||||||| ||||| || | | Sbjct 327 AGTGGATAATGTTGGTACACACGTTGTCGAGGAAGCCGGAGTCGTGGGACACCATGATGG 268 Query 319517 ACG-AAACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AACCACCTCACGTTAGACACAG 319573 | | | |||| | | | | ||||||| ||| || | ||| ||||| ||| Sbjct 267 AGGTGACCGTCGGCACGCTCG-TCAGGTAGTTC--TCGAGCCAGGCGACGTTCTTGACAT 211 Query 319574 AAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTG 319633 | ||||| |||||||| ||||| ||||| | | || ||||| ||||| ||||| | Sbjct 210 CCAAGTGGTTCGTCGGCTCATCAAGCAGCAGAATGTCAGCCTTCAGCAGCATGGCACGCG 151 Query 319634 CAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667 || |||||||||| ||||| || || ||||| Sbjct 150 ACAGCTCGAGTTTCATCTTCCAACCACCCGAAAG 117 >seq13047 Length=3013 Score = 125 bits (138), Expect = 2e-23 Identities = 453/695 (65%), Gaps = 37/695 (5%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 932 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAG 991 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 992 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 1051 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || ||| | || | |||| | ||||| |||| ||| || || || Sbjct 1052 CTTCCACACCTGTCCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 1111 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTG-------GAGTTCAGCGATACCT 319222 || || |||||||| ||| | |||| |||| | | ||| || || ||| Sbjct 1112 CTTACCGGCACCGTTGGGGCCAAGCACAGCGATACGGCTCGACAGAGCGCA-CGTCACCG 1170 Query 319223 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 319281 | || |||| || | | | || ||||| || |||| | | | || Sbjct 1171 AGATGTT---GTTGATCGACG----GCTTGGGGGTACCAGGGTACTGGTA-CGAGCAGTT 1222 Query 319282 CGT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 319340 || || ||||||| |||| |||| | | ||||| || ||||| || Sbjct 1223 GGTAAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCGGCAAGGAAACCAGGCTCCGG 1282 Query 319341 GAAC-----TTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGA 319395 |||| | ||||| ||| || ||| || ||||||| | | ||||| Sbjct 1283 GAACGTGAACTTCACGTTGTC--CGACTC---CAGCTCGTAGTAGGCCTTGGCCTCGGGC 1337 Query 319396 CGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCG 319455 || || ||||| || || || |||||||| |||||||||| || | ||| Sbjct 1338 TTCTGCTCNACGAAGAGAGAAAGGTTACCCTTGTAGATCTTCAGCTTACGG---GTCTCG 1394 Query 319456 TAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACG 319515 || ||||| || ||| || || ||||||||| || |||||||| ||||| || | | Sbjct 1395 TAGTGGATGATGTTGGTACACACGTTGTCGAGGAAGCCAGAGTCGTGGGACACCATGATG 1454 Query 319516 CACGAAAC-GTCCTTAAGGTTGATCAGGTA-TTCAATCAA-CCACCTCACGTTAGACACA 319572 | | || ||| | | | | ||||||| ||| |||| ||| ||||| ||| Sbjct 1455 GAGGTGACAGTCGGCACGCTCG-TCAGGTAGTTC--TCAAGCCAGGCGACGTTCTTGACA 1511 Query 319573 GAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGT 319632 | ||||| |||||||| ||||| ||||| | | || ||||| ||||| ||||| Sbjct 1512 TCCAAGTGGTTCGTCGGCTCATCAAGCAGCAGAATGTCAGCCTTCAGCAGCATGGCACGC 1571 Query 319633 GCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667 | || |||||||||| ||||| || || ||||| Sbjct 1572 GACAGCTCGAGTTTCATCTTCCAACCACCCGAAAG 1606 >seq14701 Length=527 Score = 111 bits (122), Expect = 3e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916 |||||| || |||||||||||||| |||| ||||||||||| || || ||||| || Sbjct 228 GGGGAAGCCCTCAAGCTGGCCGTTGGCAATGGCGCGCATCAGCGTCGACTTACCACAACC 169 Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAG 319976 ||| || || ||||||||||| |||| || || || ||| | || | ||||||||| Sbjct 168 GTTGGGACCGCACAGACCGTAACGGTGGCCACGCTTGAGGCGAAGACGGGCGTTGTTCAG 109 Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACA 320012 ||||| | ||||| || || || || || ||||| Sbjct 108 CAGAATCATACCACCGTAAGCGAGCGAGAACTCACA 73 >seq16526 Length=573 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916 |||||| || |||||||||||||| |||| ||||||||||| || || || || || Sbjct 227 GGGGAATCCCTCAAGCTGGCCGTTGGCAATGGCGCGCATCAGCGTCGACTTGCCACAACC 286 Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAG 319976 ||| || || ||||||||||| |||| || || || ||| | || | ||||||||| Sbjct 287 GTTGGGACCGCACAGACCGTAACGGTGGCCACGCTTGAGGCGAAGACGGGCGTTGTTCAG 346 Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACA 320012 ||||| | ||||| || || || || || ||||| Sbjct 347 CAGAATCATACCACCGTAAGCGAGCGAGAACTCACA 382 >seq17284 Length=1420 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 1269 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 1328 Query 165771 CCACG 165775 ||||| Sbjct 1329 CCACG 1333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056843657641160