Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq66235 143 3e-29 >seq66235 Length=2726 Score = 143 bits (158), Expect = 3e-29 Identities = 311/458 (68%), Gaps = 8/458 (2%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || ||||| || || | |||||||| | |||||| || ||||| || | Sbjct 509 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGA 568 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| || ||||| || || ||||| | ||| || || | | |||||| || | Sbjct 569 AGCTCAGGCCAGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAACGAGCCCG 628 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || ||||| |||| ||| ||||| | | || || | ||||| || || Sbjct 629 AGAAGAAGATGCCCTCCACGGCTGCGAACGCCAGCAGGCGCTCCGGGTACGACGACACTC 688 Query 17136 T-GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 | || | ||| || || |||| | ||||| | ||| | || ||||| || Sbjct 689 GCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCG 747 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAG 17253 ||||| | || | || || ||| || | || | || ||||| || ||||| || Sbjct 748 ATGGCGCGCAGCAAGTGGTCCTTCTCC-GTCGCATCCTTGATGTACGTGTCAATGAGCAG 806 Query 17254 GCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGC 17313 |||| || ||||| |||||||| || || ||||| || ||||| ||||| ||||| Sbjct 807 CGAATACACCTCCGAGTGGATGTTCTCGATCGCGATCTGGAAACCGTAGAAGCAGCGGGC 866 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCCG 17371 |||| || || ||||| | ||| |||| || || || ||||||||||||||| Sbjct 867 CTCCGGTACCTGCACTTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCG 924 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 || || || ||||| || |||| | ||||| ||||| Sbjct 925 TCACTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517077661145760