Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq66235 143 3e-29 >seq66235 Length=2726 Score = 143 bits (158), Expect = 3e-29 Identities = 313/459 (68%), Gaps = 10/459 (2%) Strand=Plus/Plus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || ||||||||||| || | || ||||| | |||||| || ||||| || | Sbjct 509 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGA 568 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| || || ||||| | |||||| || | |||| || || ||| Sbjct 569 AGCTCAGGCCAGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGG-AGCAGAACGAGCCC 627 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CA-T 16370 || ||||| || ||||| || | ||| || || | | || |||| ||||| | || | Sbjct 628 GAGAAGAAGATGCCCTCCACGGCTGCGAACGCCAGCAGGCGCTCCGGGTACGACGACACT 687 Query 16371 CTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTT 16430 | | || | ||| || | |||| | ||||| | || | ||| ||||| | Sbjct 688 CGCGGGT-CGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTAT 745 Query 16431 CTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTA 16490 | ||||| | ||| | || || ||| ||| | || ||||| ||||| || | Sbjct 746 CGATGGCGCGCAGCAAGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAGCA 805 Query 16491 AACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAG 16550 |||| || ||||| |||||||| || || ||||| || || |||||||| || | Sbjct 806 GCGAATACACCTCCGAGTGGATGTTCTCGATCGCGATCTGGAAACCGTAGAAGCAGCGGG 865 Query 16551 CCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACC 16608 |||||| || || ||||| | || |||| ||||||||||| |||||||| || Sbjct 866 CCTCCGGTACCTGCACTTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCC 923 Query 16609 GTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 |||||| ||||| || || |||| | |||||| ||||| Sbjct 924 GTCACTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510952004670240