Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq71182 253 2e-62 seq53744 214 2e-50 >seq71182 Length=8880 Score = 253 bits (280), Expect = 2e-62 Identities = 490/710 (69%), Gaps = 15/710 (2%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||||| ||||||||||| || ||||| || || || | ||||||| || || || Sbjct 2797 AGCGGCTCGACGTGGTTGAGATACACGTGGGCATCACCAATAACGTGGACAAACTCGCCA 2738 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAG-GTCAGCAGGGAGTAGCTGGCTATGTT 145802 |||| || || | | || || | || || | || |||| | ||||||||| || || Sbjct 2737 GGCTTCAGTCCACTCACCTGTGCTATCA-GTCGCGTAAGCAACGCGTAGCTGGCGATATT 2679 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC 145862 ||| ||||| || || |||||||| ||||||||||||||| ||||||||| | ||| || Sbjct 2678 GAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCTCC 2619 Query 145863 GCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 | | ||||||||||||||||| | | |||||| ||||| || ||||| | || || Sbjct 2618 GTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATC 2559 Query 145923 CGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTG-CTCTCGGGGTTCCTCTTGATCTCCC 145981 |||||| ||||| || | || |||| || | | | || || ||| | | || Sbjct 2558 CGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTC-GGATTCGTGCGCAGCTTGT 2500 Query 145982 CTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACG 146040 || | || ||||||||||||||||||| || ||| || | | || | |||| | Sbjct 2499 GAATAACCTCGGTGAGCTGGTCCACGCCCTGGCCAGTGTAGTC-GGCGTGCATGTCCGTG 2441 Query 146041 TACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCC 146100 ||| |||||| ||||| | ||||||||| |||||||| || || ||||| || ||| Sbjct 2440 TACTTGGCCCCAAAGTGACGCCACTGGAAGCCGTAGACCGGTCCAAGGTCGCCAACTTCC 2381 Query 146101 CTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTG 146160 | | ||| || | | | || | ||||| ||||| ||| |||||||||| | | Sbjct 2380 CGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGACCCATTGCCGTCCCAGATGTGG 2321 Query 146161 ACGCCCCTC-GCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTC 146219 | | || || || | ||| | | |||| || ||||||||||| |||||||| Sbjct 2320 ATGTCCTTCTGCTG-CAGCGTGTGCGCACTCGTGTCTCCACTGATGAACCACAGCAGCTC 2262 Query 146220 TTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGCCCCG 146276 || || || | ||||||||| | |||||| || |||| |||||| | | ||| Sbjct 2261 CTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAACGGGAACACGTTGTCCCT 2202 Query 146277 CAGGGAGTACTTGGCCTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCC--TGTCC 146334 ||| | || ||| | |||||||| ||||| || ||| ||||| | | ||| Sbjct 2201 CAGACTGAACCGCATCTGCGCTCCGAAGACCGACAGCGTCCCCGTTCCCGTGCGATCTCC 2142 Query 146335 CCCCTGCGCACCCCGTTCGCCAGGATCTCCCTGACGGTGTTGAGGTACTG 146384 | || ||| || | | |||||||| || || || ||||||||| Sbjct 2141 GCGCTTCGCTCCTTGGT--TCAGGATCTTCCGGATCAAGTCGAGGTACTG 2094 >seq53744 Length=11616 Score = 214 bits (236), Expect = 2e-50 Identities = 484/713 (68%), Gaps = 21/713 (3%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||||| |||||||| || || ||||| || || || | || |||| || || || Sbjct 2797 AGCGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACATGGACAAACTCGCCA 2738 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAG-GTCAGCAGGGAGTAGCTGGCTATGTT 145802 |||| || || | | || || |||| || | || |||| | ||||||||| || || Sbjct 2737 GGCTTCAGCCCACTCACCTGCGCTACCA-GTCGCGTAAGCAACGCGTAGCTGGCGATATT 2679 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC 145862 ||| ||||| || || |||||||| ||||||||||||||| |||||||| | ||| || Sbjct 2678 GAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATTTGGCAGGACAACTCGCC 2619 Query 145863 GCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 | | ||||||||||| || || | | |||||| ||||| || ||||| | || || Sbjct 2618 GTCGGCCACGTAGAATTGACAGAACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATC 2559 Query 145923 CGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTG-CTCTCGGGGTTCCTCTTGATCTCCC 145981 |||||| ||||| || | || |||| || | | | || || ||| | | || Sbjct 2558 CGCCGGATTCCACGCCGACAGCACGATCCGACGGTCAGTC-GGATTCGTGCGCAGCTTGT 2500 Query 145982 CTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACG 146040 || | || |||||||||||||||||| || ||| || | | || | |||| | Sbjct 2499 GGATAACCTCGGCGAGCTGGTCCACGCCCTGACCAGTGTAGTC-GGCATGCATGTCCGTG 2441 Query 146041 TACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCC 146100 ||| |||||| || || | ||||||||| |||||||| ||||| ||||| || || Sbjct 2440 TACTTGGCCCCAAAATGACGCCACTGGAAGCCGTAGACCGGCCCGAGGTCGCCAACTTCT 2381 Query 146101 CTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTG 146160 | | ||| || | | | || | ||||| ||||||||| |||||||||| | | Sbjct 2380 CGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGACCCGTTGCCGTCCCAGATGTGG 2321 Query 146161 ACGCCCCTC-GCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTC 146219 | || || || | ||| | | |||| || ||||||||||| |||||||| Sbjct 2320 ATATCCTTCTGCTG-CAGCGTGTGCGCACTCGTGTCGCCACTGATGAACCACAGCAGCTC 2262 Query 146220 TTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGCCCCG 146276 || || || | ||| ||||| | |||||| || |||| |||||| | | ||| Sbjct 2261 CTCCGCCACGCCACGCCAAAAGACGCGCTTGGTCGTGAGCAACGGGAACACATTGTCCCT 2202 Query 146277 CAG---GGAGTACTTGGCCTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCC--TG 146331 ||| | || | | ||| | |||||||| ||||| || ||| ||||| | | Sbjct 2201 CAGACTGAAGCGCAT---CTGCGCTCCGAAGACCGACAGCGTCCCCGTTCCCGTGCGATC 2145 Query 146332 TCCCCCCTGCGCACCCCGTTCGCCAGGATCTCCCTGACGGTGTTGAGGTACTG 146384 ||| | || | | || | | |||||||| || || || ||||||||| Sbjct 2144 TCCGCGCTTGG--CTCCTTGGGTCAGGATCTTCCGGATCAAGTCGAGGTACTG 2094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589543282061280