Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq65733 82.4 9e-11 seq50879 82.4 9e-11 seq21225 82.4 9e-11 seq20607 82.4 9e-11 seq14030 82.4 9e-11 >seq65733 Length=2460 Score = 82.4 bits (90), Expect = 9e-11 Identities = 118/165 (72%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 83255 CGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGC 83314 || |||||| |||||||| || || | || |||||||||||| |||||| |||| Sbjct 142 CGCAGGAAGTTGAAGAGCGCGTGCGCGTTGGCGCCGTTGACCTCGACCTTCTCCGTGAGC 201 Query 83315 ATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGAT---C 83371 ||| |||||||||||| || || || |||| |||| ||| | |||| | Sbjct 202 TGGAAGGCCGGCTCGAAGCCCTTGCCGGGGCGGATGTGCCGCAGACTCTGGTAGATTTCC 261 Query 83372 TCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 ||| | || | ||| |||||||| ||||||||||| |||||| Sbjct 262 TCGCCGTT---GAGGTTCTCCTGGTGGCCGAACTGGTTGCACGGG 303 >seq50879 Length=7474 Score = 82.4 bits (90), Expect = 9e-11 Identities = 118/165 (72%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 83255 CGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGC 83314 || |||||| |||||||| || || | || |||||||||||| |||||| |||| Sbjct 818 CGCAGGAAGTTGAAGAGCGCGTGCGCGTTGGCGCCGTTGACCTCGACCTTCTCCGTGAGC 759 Query 83315 ATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGAT---C 83371 ||| |||||||||||| || || || |||| |||| ||| | |||| | Sbjct 758 TGGAAGGCCGGCTCGAAGCCCTTGCCGGGGCGGATGTGCCGCAGACTCTGGTAGATTTCC 699 Query 83372 TCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 ||| | || | ||| |||||||| ||||||||||| |||||| Sbjct 698 TCGCCGTT---GAGGTTCTCCTGGTGGCCGAACTGGTTGCACGGG 657 >seq21225 Length=1941 Score = 82.4 bits (90), Expect = 9e-11 Identities = 118/165 (72%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 83255 CGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGC 83314 || |||||| |||||||| || || | || |||||||||||| |||||| |||| Sbjct 1800 CGCAGGAAGTTGAAGAGCGCGTGCGCGTTGGCGCCGTTGACCTCGACCTTCTCCGTGAGC 1741 Query 83315 ATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGAT---C 83371 ||| |||||||||||| || || || |||| |||| ||| | |||| | Sbjct 1740 TGGAAGGCCGGCTCGAAGCCCTTGCCGGGGCGGATGTGCCGCAGACTCTGGTAGATTTCC 1681 Query 83372 TCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 ||| | || | ||| |||||||| ||||||||||| |||||| Sbjct 1680 TCGCCGTT---GAGGTTCTCCTGGTGGCCGAACTGGTTGCACGGG 1639 >seq20607 Length=2979 Score = 82.4 bits (90), Expect = 9e-11 Identities = 118/165 (72%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 83255 CGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGC 83314 || |||||| |||||||| || || | || |||||||||||| |||||| |||| Sbjct 142 CGCAGGAAGTTGAAGAGCGCGTGCGCGTTGGCGCCGTTGACCTCGACCTTCTCCGTGAGC 201 Query 83315 ATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGAT---C 83371 ||| |||||||||||| || || || |||| |||| ||| | |||| | Sbjct 202 TGGAAGGCCGGCTCGAAGCCCTTGCCGGGGCGGATGTGCCGCAGACTCTGGTAGATTTCC 261 Query 83372 TCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 ||| | || | ||| |||||||| ||||||||||| |||||| Sbjct 262 TCGCCGTT---GAGGTTCTCCTGGTGGCCGAACTGGTTGCACGGG 303 >seq14030 Length=1956 Score = 82.4 bits (90), Expect = 9e-11 Identities = 118/165 (72%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 83255 CGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGC 83314 || |||||| |||||||| || || | || |||||||||||| |||||| |||| Sbjct 1139 CGCAGGAAGTTGAAGAGCGCGTGCGCGTTGGCGCCGTTGACCTCGACCTTCTCCGTGAGC 1198 Query 83315 ATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGAT---C 83371 ||| |||||||||||| || || || |||| |||| ||| | |||| | Sbjct 1199 TGGAAGGCCGGCTCGAAGCCCTTGCCGGGGCGGATGTGCCGCAGACTCTGGTAGATTTCC 1258 Query 83372 TCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 ||| | || | ||| |||||||| ||||||||||| |||||| Sbjct 1259 TCGCCGTT---GAGGTTCTCCTGGTGGCCGAACTGGTTGCACGGG 1300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608246356373280