Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq53744 122 2e-22 >seq53744 Length=11616 Score = 122 bits (134), Expect = 2e-22 Identities = 442/674 (66%), Gaps = 22/674 (3%) Strand=Plus/Plus Query 35153 GATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGA 35212 ||| | || ||||| || || || || | || ||| | || ||| | ||| ||| | Sbjct 2145 GATCGCACGGGAACGGGGACGCTGTCGGTCTTCGGAGCGCAGATGCGCTTCAGTCTGAGG 2204 Query 35213 GACGACACTATTCCAGTT-CTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGA 35271 ||| | | |||| ||| ||||| |||||| | || ||| | || || | ||| || Sbjct 2205 GACAATG-TGTTCCCGTTGCTCACGACCAAGCGCGTCTTTTGGCGTGGCGTGGCGGAGGA 2263 Query 35272 ACTCTCGTGGTTCATCAGGGGCAATAC-AGA-CGCCAAAGAATTGGCCAAGAAGAAGATA 35329 || |||||||||||| ||| | || || ||| | | || ||||| | || Sbjct 2264 GCTGCTGTGGTTCATCAGTGGCGACACGAGTGCGCACACGCTGCAGC--AGAAGGATATC 2321 Query 35330 CACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGA 35389 ||||||||| ||| || ||||||||||| | | |||||||| |||| | | || Sbjct 2322 CACATCTGGGACGGCAACGGGTCGCGGGAGTATCTGGACAGTCGAGGACTGCAGTCGCGA 2381 Query 35390 GCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA- 35448 | || || || | || || || ||||| ||||| |||||||||||||| || | || Sbjct 2382 GAAGTTGGCGACCTCGGGCCGGTCTACGGCTTCCAGTGGCGTCATTTTGGGGCCAAGTAC 2441 Query 35449 TGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAA---TATACT 35505 || || | |||| || ||||| |||| | || || | ||| | ||| | Sbjct 2442 ACGGACATG-CATGCCGACTACACTGGTCAGGGCGTGGACCAGCTCGCCGAGGTTATCCA 2500 Query 35506 AAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTAT 35565 ||| ||| | ||||| ||| | |||| | || |||| |||||||| Sbjct 2501 CAAG---CTGCGCACGAATCCGACTGACCGTCGGATCGTGCTGTCGGCGTGGAATCCGGC 2557 Query 35566 GGATCTTCACCTTATGGCTCTTCCTCCATGCCACATG-ACTGCTCAATTTTATGTGGCTA 35624 |||||| | ||||| || || || ||||||||| ||| |||||| || ||||| Sbjct 2558 GGATCTCAATGAGATGGCGCTCCCGCCGTGCCACATGTTCTG-TCAATTCTACGTGGCCG 2616 Query 35625 ATGGAGAATTGTCGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCC 35682 | || || ||||| ||||| |||| ||||| || || ||| || | |||||||| Sbjct 2617 ACGGCGAGTTGTCCTGCCAAATGTACCAGCGCTCGGCCGACATG--GGACTTGGCGTGCC 2674 Query 35683 CTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGC-CAGTATGGTGGGTCTAA 35741 |||||||| || ||| | | || || | ||| | || ||| ||||| || | Sbjct 2675 GTTCAATATCGCCAGCTACGCGTTGCTTACGCGACTGGTAGCGCAGGTGAGTGGG-CTGA 2733 Query 35742 AACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCCACATTGAGG 35801 | || || |||||| ||| | |||| || || ||| | ||| | |||| | ||| Sbjct 2734 AGCCTGGCGAGTTTGTCCATGTTATTGGCGATGCCCACGTGTATCTGAACCACGTCGAGC 2793 Query 35802 TGTTAAAGAAGCAG 35815 | | |||||||| Sbjct 2794 CGCTCCAGAAGCAG 2807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988666899317060