Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq71182 199 3e-46 seq53744 197 1e-45 >seq71182 Length=8880 Score = 199 bits (220), Expect = 3e-46 Identities = 296/419 (71%), Gaps = 18/419 (4%) Strand=Plus/Minus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 || || || ||||||||| || |||||||| ||||| | ||| ||||| || || Sbjct 2797 AGCGGCTCGACGTGGTTGAGATACACGTGGGCATCACCAATAACGTGGACAAACTCGCCA 2738 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 || |||| || | || || || ||||| ||| || | |||||||||||||| || Sbjct 2737 GGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAGCTGGCGATATTG 2678 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104 ||||| || || || ||||||||||| || | |||||||| ||||||||||| ||| || Sbjct 2677 AACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCTCCG 2618 Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCC 21164 |||||||| ||||| || || | ||| || || ||||| |||||| ||| ||| Sbjct 2617 TCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATCC 2558 Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGATC-GTGGG--------GCCGCCTGTTA 21215 || || |||||||| ||| ||||| || || || || || || || ||| | Sbjct 2557 GCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATTCGTGCGCAGCTTGTGA 2498 Query 21216 ATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCC 21275 || ||| || ||||||||||| ||||| || ||||| ||||| Sbjct 2497 AT------AACCTCG---GTGAGCTGGTCCACGCCCTGGCCAGTGTAGTCGGCGTGCATG 2447 Query 21276 CCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 || |||||| |||||||| || | ||||||||| ||||| ||||| || || ||||| Sbjct 2446 TCCGTGTACTTGGCCCCAAAGTGACGCCACTGGAAGCCGTAGACCGGTCCAAGGTCGCC 2388 >seq53744 Length=11616 Score = 197 bits (218), Expect = 1e-45 Identities = 417/617 (68%), Gaps = 39/617 (6%) Strand=Plus/Minus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 || || || |||||||| || |||||||| || || | || ||||| || || Sbjct 2797 AGCGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACATGGACAAACTCGCCA 2738 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 || |||| || | || || || | ||| ||| || | |||||||||||||| || Sbjct 2737 GGCTTCAGCCCACTCACCTGCGCTACCAGTCGCGTAAGCAACGCGTAGCTGGCGATATTG 2678 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104 ||||| || || || ||||||||||| || | |||||||| |||||||||| ||| || Sbjct 2677 AACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATTTGGCAGGACAACTCGCCG 2618 Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCC 21164 |||||||| || ||||| || | ||| || || ||||| |||||| ||| ||| Sbjct 2617 TCGGCCACGTAGAATTGACAGAACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATCC 2558 Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGATC-GTGGG--------GCCGCCTGTTA 21215 || || |||||||| ||| ||||| || || || || || || || ||| Sbjct 2557 GCCGGATTCCACGCCGACAGCACGATCCGACGGTCAGTCGGATTCGTGCGCAGCTTGTGG 2498 Query 21216 ATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCC 21275 || | || | || ||||||||||| |||||||| ||||| ||| | Sbjct 2497 AT---AACCTCGGCG------AGCTGGTCCACGCCCTGACCAGTGTAGTCGGCATGCATG 2447 Query 21276 CCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC- 21334 || |||||| ||||||||||| | ||||||||| ||||| |||||||| || ||||| Sbjct 2446 TCCGTGTACTTGGCCCCAAAATGACGCCACTGGAAGCCGTAGACCGGCCCGAGGTCGCCA 2387 Query 21335 ----CTCGCG---GCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCG 21387 |||||| || |||| ||| ||| ||| | | | || ||||||| Sbjct 2386 ACTTCTCGCGACTGCAGTCCTCGA----CTG----TCCAGATACTCCCGCGACCCGTTGC 2335 Query 21388 CGTCCCAAATTTTTACGCCGCGGCGCGACAG-TTCGGTGGAGTCGGTGGAGCCCCTGATA 21446 ||||||| || | | | || ||| | | | | || ||| ||| ||||| Sbjct 2334 CGTCCCAGATGTGGATATCCTTCTGCTGCAGCGTGTGCGCACTC-GTGTCGCCACTGATG 2276 Query 21447 AACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGA 21506 |||||||||| ||||||| | ||||| | |||||| || | ||||| || | || || Sbjct 2275 AACCACAGCAGCTCCTCCGCCACGCCACGCCAAAAGACGCGCTTGGTCGTGAGCAACGGG 2216 Query 21507 AAC---TCGTCCCTGAG 21520 ||| | |||||| || Sbjct 2215 AACACATTGTCCCTCAG 2199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427398895671360