Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_004681.1 Length=75931 Score E Sequences producing significant alignments: (Bits) Value seq50881 147 1e-30 seq67281 123 1e-23 >seq50881 Length=8092 Score = 147 bits (162), Expect = 1e-30 Identities = 332/496 (67%), Gaps = 5/496 (1%) Strand=Plus/Minus Query 66838 CGCCTACATCGACGCTGAGCACTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGA 66897 ||||| ||||||||| ||||| || | ||| || | ||||||||||| || ||||| || Sbjct 3969 CGCCTTCATCGACGCAGAGCATGCCATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGA 3910 Query 66898 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66957 | | ||| || || ||||||||| | ||||| | || |||||||||| || Sbjct 3909 CATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGA 3850 Query 66958 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 67017 ||| ||| ||| || | || | |||| || | ||| |||||| || ||||| Sbjct 3849 TACGCTCATCAGGTCGGGAGCCGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCTCTGGT 3790 Query 67018 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 67077 |||||| || ||||| || || || || || ||| || | | ||||| ||||| || Sbjct 3789 GCCGCGTGCGGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCACTGCAGGCGCGACT 3730 Query 67078 CATGTCGCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAAC-ACGCTGACGC 67136 |||| ||||| |||| |||||||| || | | |||| ||||| | || | Sbjct 3729 CATGAGTCAGGCGCTGCGAAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACT-ATTA 3671 Query 67137 TCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCA 67196 ||| | |||||| | || ||||| | || | | | || ||| | |||| | Sbjct 3670 TCTTCCTGAACCAGATTCGTCAGAAGGTGGGGATCAT---CTTCGGATCTCCTGAGGTTA 3614 Query 67197 CCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCG 67256 | |||| || | || || | | |||||| || || | |||| | ||||||| Sbjct 3613 CGTCGGGTGGCACAGCGCTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGCAAGA 3554 Query 67257 CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGA 67316 | || ||||| ||||| ||| |||||||||| || |||||| || | |||| Sbjct 3553 CGGCCATCAAGGAGGGCGACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCGAAGA 3494 Query 67317 ACAAGCTGGCCCCGCC 67332 ||||||| ||| |||| Sbjct 3493 ACAAGCTTGCCTCGCC 3478 >seq67281 Length=12622 Score = 123 bits (136), Expect = 1e-23 Identities = 316/479 (66%), Gaps = 9/479 (2%) Strand=Plus/Plus Query 66857 CACTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 66916 ||| || | ||| || | ||||||||||| || || || ||| | ||| || || Sbjct 8673 CACGCCATTGACGCCCACTACGCCAAGGCTCTGGGCGTCGACATTGACGCGCTGTACGTC 8732 Query 66917 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 66976 ||||||||| | || || | || |||||||||| ||| ||| ||| ||| || Sbjct 8733 TCGCAGCCGGACTCGGGTGAAGAAGCTCTGGAGATCGCCGACACGCTCATCAGGTCGGGA 8792 Query 66977 GAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 67036 | | || | |||| || | ||| |||||| || ||||||||||| || ||||| ||| Sbjct 8793 GCGGTGGACCTCGTGGTGCTCGACAGTGTGGCAGCTCTGGTGCCGCGTGCGGAGCTGGAA 8852 Query 67037 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 67096 || || || |||||| || | | ||||| ||||| |||||| ||||| |||| Sbjct 8853 GGTGAAATGGGGGACCAGCAGATTGCACTGCAGGCGCGACTCATGAGTCAGGCGCTGCGG 8912 Query 67097 AAGCTCACTGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTG 67153 |||||||| || | | |||| |||| ||| | | ||| | |||||| | Sbjct 8913 AAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA---TCTTCCTGAACCAGATT 8969 Query 67154 CGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCT 67213 || ||||| | || | | | || || | |||| || |||| || | ||| Sbjct 8970 CGTCAGAAGGTGGGAATCAT---CTTTGGATCTCCTGAGGTTACGTCGGGTGGCACGGCG 9026 Query 67214 TTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGC 67273 || | | |||||| || || | |||| | ||||| | | || ||||| ||| Sbjct 9027 CTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGTAAGACGGCCATCAAGGAGGGC 9086 Query 67274 GATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCC 67332 || ||| |||||||||| || |||||| || | ||||||||| || || |||| Sbjct 9087 GACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAAGAACAAACTTGCATCGCC 9145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242640312614384