Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq10229 87.8 1e-12 seq7695 87.8 1e-12 seq51638 82.4 6e-11 >seq10229 Length=4391 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||| |||||||| || || ||||| || || || | ||||||| Sbjct 2736 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 2677 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| || || | |||||| ||||| Sbjct 2676 CAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 2617 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| ||||| || || | | ||| | || ||||| |||| || ||||| || Sbjct 2616 AATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCTACGTCGAGCGTGATGGTCTT 2557 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || || || ||||| ||||| |||||| Sbjct 2556 GCCCGTCAACGTCTTGACGAAAATCTGCATT 2526 >seq7695 Length=5764 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||| |||||||| || || ||||| || || || | ||||||| Sbjct 5717 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 5658 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| || || | |||||| ||||| Sbjct 5657 CAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 5598 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| ||||| || || | | | | | || |||||| |||| || ||||| || Sbjct 5597 AATCTTCTGCTTCACGTTGTCAATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGTCTT 5538 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| || | || ||||| ||||| |||||| Sbjct 5537 ACCCGTCAGCGTCTTGACGAAAATCTGCATT 5507 >seq51638 Length=8654 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||| |||||||| || || ||||| || || || | ||||||| Sbjct 8425 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 8484 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| || || | |||||| ||||| Sbjct 8485 CAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 8544 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| ||||| || || | | ||| | || |||||| |||| || ||||| || Sbjct 8545 AATCTTCTGCTTCACGTTGTCGATCGAGTCAGACGGCTCCACGTCGAGCGTGATGGTCTT 8604 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| || || ||||| Sbjct 8605 GCCCGTCAGCGTCTTGACGAAGATCTGCAT 8634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414207334902808