Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq29366 159 3e-34 seq57003 158 1e-33 seq50704 156 4e-33 seq64538 149 5e-31 >seq29366 Length=1830 Score = 159 bits (176), Expect = 3e-34 Identities = 200/269 (74%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACG-CCACCT 5558 |||||||||| ||||| ||||| ||||| | |||| || || | | || |||||| Sbjct 989 CACGCCCGTGCTGCCGAAGCCGCCGGCGCCACGCGCCGTGTCCTCGAT-CTCGTCCACCT 931 Query 5559 CTTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCC-CGTC 5617 | | | || ||| || | |||| ||| |||||||| | ||||| || ||| Sbjct 930 CCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTCTCCGCGT- 872 Query 5618 TTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || || ||| || | | || ||||||||| | |||||||||||||||||||||| Sbjct 871 TTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAG 812 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 |||||||| |||||||| |||||| ||||||||| | ||||| ||| || |||||||| Sbjct 811 TCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGCCCGGAGCGC 752 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGG 5766 || |||||||| ||||||| || ||||| Sbjct 751 GGCGCCACGCGCGCGTAGCATCCGTCGGG 723 >seq57003 Length=3684 Score = 158 bits (174), Expect = 1e-33 Identities = 199/269 (74%), Gaps = 4/269 (1%) Strand=Plus/Plus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACG-CCACCT 5558 |||||||||| || || ||||| ||||| | |||| || || | | || |||||| Sbjct 420 CACGCCCGTGCTGCCRAARCCGCCGGCGCCACGCGCCGTGTCCTCGAT-CTCGTCCACCT 478 Query 5559 CTTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCC-CGTC 5617 | | | || ||| || | |||| ||| |||||||| | ||||| || ||| Sbjct 479 CCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTCTCCGCGT- 537 Query 5618 TTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || || ||| || | | || ||||||||| | |||||||||||||||||||||| Sbjct 538 TTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAG 597 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 |||||||| |||||||| |||||| ||||||||| | ||||| ||| || |||||||| Sbjct 598 TCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGCCCGGAGCGC 657 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGG 5766 || |||||||| ||||||| || ||||| Sbjct 658 GGCGCCACGCGCGCGTAGCATCCGTCGGG 686 >seq50704 Length=6601 Score = 156 bits (172), Expect = 4e-33 Identities = 199/269 (74%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACG-CCACCT 5558 |||||||||| ||||| ||||| ||||| | |||| || || | | || |||||| Sbjct 3256 CACGCCCGTGCTGCCGAAACCGCCGGCGCCACGCGCCGTGTCCTCGAT-CTCGTCCACCT 3198 Query 5559 CTTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCC-CGTC 5617 | | | || ||| || | |||| ||| |||||||| | ||||| || ||| Sbjct 3197 CCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTCTCCGCGT- 3139 Query 5618 TTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || || ||| || | | || ||||||||| | |||||||||||||||||||||| Sbjct 3138 TTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAG 3079 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 |||||||| |||||||| |||||| ||||||||| | ||||| || || |||||||| Sbjct 3078 TCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGTGCAAGTCCGGAGCGC 3019 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGG 5766 || |||||||| ||||||| || ||||| Sbjct 3018 GGCGCCACGCGCGCGTAGCATCCGTCGGG 2990 >seq64538 Length=4600 Score = 149 bits (164), Expect = 5e-31 Identities = 145/184 (79%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 5584 CTCGCAGATCAGCTGCGCTATTCGGTCGCC-CGTCTTTACCTCGAAATCGTTGTGGCCGA 5642 |||| ||| |||||||| | ||||| || ||| || || ||| || | | || Sbjct 3180 CTCGAGGATGAGCTGCGCCACGCGGTCTCCGCGT-TTGACGGGGAAGTCCTCGGCCGCGT 3122 Query 5643 AGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCA 5702 ||||||||| | |||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 3121 GGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACGCCGGCGCCCG 3062 Query 5703 CGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCCAT 5762 ||||||||| | ||||| ||| || |||||||| || |||||||| ||||||| || | Sbjct 3061 TGTCGATGAACTTCTTGAGCGCGAGTCCGGAGCGCGGCGCCACGCGCGCGTAGCAGCCGT 3002 Query 5763 CGGG 5766 |||| Sbjct 3001 CGGG 2998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429675287156384