Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq71182 134 9e-27 seq53744 109 4e-19 seq64538 87.8 1e-12 >seq71182 Length=8880 Score = 134 bits (148), Expect = 9e-27 Identities = 371/564 (66%), Gaps = 21/564 (4%) Strand=Plus/Minus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| ||||| || ||||| | || || ||||| || || || | | |||| Sbjct 2809 AGCTGCTTCTGGAGCGGCTCGACGTGGTTGAGATACACGTGGGCATCACCAATAACGTGG 2750 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532 |||||||| || || | || || | || | || |||| ||| || | |||| Sbjct 2749 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 2690 Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACA 25592 |||||||| || || || || || | ||||||| | |||| | |||||| | ||| || Sbjct 2689 CTGGCGATATTGAACGGCACGCCAAGTCCCATGT-CGGCCGAGCGCTGGTACATCTGGCA 2631 Query 25593 CGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 || | |||| ||||| |||||| ||||| || | ||| |||||| || || || || Sbjct 2630 GGACAACTCTCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT 2571 Query 25653 AAGGCCCA---AG-TCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTC-TTCTGGG 25707 | || || || || ||||| || ||| | ||| | | ||| || | Sbjct 2570 ----CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGAT 2515 Query 25708 TTGT-----CCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 25762 | || | || || | || ||||| ||||| ||||| ||| || | || Sbjct 2514 TCGTGCGCAGCTTGTGAATAACCTCGGTG------AGCTGGTCCACGCCCTGGCCAGTGT 2461 Query 25763 AGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCG 25822 |||| || |||||||||||||| || || || | | ||||||||| ||||| |||| Sbjct 2460 AGTCGGCGTGCATGTCCGTGTACTTGGCCCCAAAGTGACGCCACTGGAAGCCGTAGACCG 2401 Query 25823 GTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAAC 25882 |||| ||||| ||| |||||| || | || | | |||| | | || | || | Sbjct 2400 GTCCAAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGACC 2341 Query 25883 CATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTC 25942 ||||| |||||||||| | | |||||| ||| | | | ||| || | Sbjct 2340 CATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCTCCAC 2281 Query 25943 TGACGAACCACAGCAGCTCCGCCG 25966 ||| |||||||||||||||| ||| Sbjct 2280 TGATGAACCACAGCAGCTCCTCCG 2257 >seq53744 Length=11616 Score = 109 bits (120), Expect = 4e-19 Identities = 367/567 (65%), Gaps = 27/567 (5%) Strand=Plus/Minus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| ||||| || ||||| | ||| || ||||| || || || | | ||| Sbjct 2809 AGCTGCTTCTGGAGCGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACATGG 2750 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532 |||||||| || || | ||||| | || | || | || ||| || | |||| Sbjct 2749 ACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGCTACCAGTCGCGTAAGCAACGCGTAG 2690 Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACA 25592 |||||||| || || || || || | ||||||| | |||| | |||||| | || || Sbjct 2689 CTGGCGATATTGAACGGCACGCCAAGTCCCATGT-CGGCCGAGCGCTGGTACATTTGGCA 2631 Query 25593 CGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 || | ||| ||||| |||||| || ||||| | ||| |||||| || || || || Sbjct 2630 GGACAACTCGCCGTCGGCCACGTAGAATTGACAGAACATGTGGCACGGCGGGAGCGCCAT 2571 Query 25653 AAGGCCCA---AG-TCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTC-TTCTGGG 25707 | || || || || ||||| || ||| | ||| | | ||| || | Sbjct 2570 ----CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCAGTCGGAT 2515 Query 25708 TTGTCC----CT----GATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCG 25759 | || | || ||||| || ||| ||||| ||||| ||| || | Sbjct 2514 TCGTGCGCAGCTTGTGGATAACCTCGGCG---------AGCTGGTCCACGCCCTGACCAG 2464 Query 25760 AGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACA 25819 |||||| || |||||||||||||| || || |||| | ||||||||| ||||| | Sbjct 2463 TGTAGTCGGCATGCATGTCCGTGTACTTGGCCCCAAAATGACGCCACTGGAAGCCGTAGA 2404 Query 25820 CCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGG 25879 |||| || ||||| ||| |||| | || | || | | |||| | | || | | Sbjct 2403 CCGGCCCGAGGTCGCCAACTTCTCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCG 2344 Query 25880 AACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACC 25939 | || ||| |||||||||| | | |||||| ||| | | | ||| | Sbjct 2343 ACCCGTTGCCGTCCCAGATGTGGATATCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCGC 2284 Query 25940 CTCTGACGAACCACAGCAGCTCCGCCG 25966 | |||| |||||||||||||||| ||| Sbjct 2283 CACTGATGAACCACAGCAGCTCCTCCG 2257 >seq64538 Length=4600 Score = 87.8 bits (96), Expect = 1e-12 Identities = 203/306 (66%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 40691 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 40750 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 3213 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 3154 Query 40751 GCCCCTCTCGACCCGAAAAGGGTCGCACCCAAAGTTAAACAATATGACGCCGAGGTTGCC 40810 || | | ||| | || ||| | | ||| |||| || ||||| | |||||| Sbjct 3153 TCCGCGTTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 3094 Query 40811 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTCCAGGGCCAGGCC 40870 | |||||||| ||| | ||| ||||| || ||| || || || | || || || || Sbjct 3093 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCC 3034 Query 40871 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTTACGGCCAGGTCCGTCTT 40930 ||| | || ||||| | ||||| ||| ||| | | | ||||||||||||| Sbjct 3033 GGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 2974 Query 40931 TACCAGGGCCCTGCCAAAGGAGGGGACCACGACCGGGTAAGCGGCCGCTAGGTCGTAACC 40990 || ||| || |||| | ||||| |||| | |||||| |||| ||||| ||| Sbjct 2973 GACGAGGCCCTTGCCGCCCGCGGGGATCACGGCATCGTAAGCAGCCGACAGGTCCAGACC 2914 Query 40991 CGCGGC 40996 |||||| Sbjct 2913 CGCGGC 2908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339837752974236