Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1442 86.0 5e-12 seq7695 82.4 6e-11 >seq1442 Length=7791 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 48537 CCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAA 48596 |||| || |||||||| || | | || ||||||| |||||||| ||| || | | Sbjct 5675 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 5734 Query 48597 TTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG 48656 | | ||||||||| || ||| | | ||||||||| ||||||||||||| | Sbjct 5735 TCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 5794 Query 48657 CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAA 48716 | ||| | |||| | |||| || | || ||||| || || || || || ||||||| Sbjct 5795 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 5854 Query 48717 AAATCTGCAT 48726 | |||||||| Sbjct 5855 AGATCTGCAT 5864 >seq7695 Length=5764 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || || | || || |||||||||||||||| ||| || Sbjct 5699 CTCCTTCTGGATGTTGTAGTC-GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGA 5641 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||| || ||| | | ||||||||| ||| |||||||| | Sbjct 5640 AGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGT 5581 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | || | || | | |||| |||| || ||||| ||||| || || || || | Sbjct 5580 TGTCAATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTACCCGTCAGCGTCTTGA 5521 Query 48714 CAAAAATCTGCATCGTGTCTTG 48735 | ||||||||||| || |||| Sbjct 5520 CGAAAATCTGCATTGTTGCTTG 5499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420879847584332