Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_006151.1 Length=143461 Score E Sequences producing significant alignments: (Bits) Value seq71572 102 7e-17 seq14095 102 7e-17 seq58340 96.9 3e-15 >seq71572 Length=11169 Score = 102 bits (112), Expect = 7e-17 Identities = 262/389 (67%), Gaps = 14/389 (4%) Strand=Plus/Plus Query 94088 CCCCAGAGCATGAACACCA-GCTTGGGGCGGGTCTCGCAGAGCCGCTGGACGACGGCGCG 94146 |||||||||| |||||| | | ||| ||| || || || || || ||||||| Sbjct 7561 CCCCAGAGCAGGAACACGACGTTTGAGGCTTC-CTTGCTGACCCTGGAGATGACGGCGTC 7619 Query 94147 CACGAGCCGCGCCCAGCCGAGCGGGGCGTGGGAGCCGGGGACCCCGCGCCGCACGGTCAG 94206 || | | |||||||| || ||| ||| || | || || || ||||| || Sbjct 7620 TGTGAACTGTTCCCAGCCGCGCTTCTTGTGCGAGTTGGCCTCTCCTCGACGGACGGTAAG 7679 Query 94207 CGTCGTGTTCAGCAGCAGCACCCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGGGCGGG 94266 | ||||| ||||||||||| || | || |||| || ||||||||||| ||| Sbjct 7680 CACAGTGTTGAGCAGCAGCACGCCCTGTCGACTCCAGCAAGACAAGCAGCCGTGGGTGGG 7739 Query 94267 CGCGGGCAGCGTCGGGTACGTCGCCCG-GACCGCCGCGAAGATGTTGGCCAGGCTCGGGG 94325 ||| ||| | | |||||| | | || || ||||||||| || || || | Sbjct 7740 -GCGCGCAATGCCC---ACGTCGTTCATGGCCTCCTTGAAGATGTTCTTGAGACTGGGCG 7795 Query 94326 GGATCGGCACCCCGCGCCGGACGCTGAAGGCCAGCCCGTGGGCCTGGCCCGGCCCGTGGT 94385 | ||| || ||| | || || |||| ||| ||||| ||||| ||| ||||||| Sbjct 7796 GCGGCGGGACTCCGTGGCGCACTGAGAAGCTCAGTCCGTGAGCCTGTTGCGGTCCGTGGT 7855 Query 94386 ACGGGTCCTGGCCGATGATGACCACCTTGACGTCCTCG--GGCGCCGTGAGGC-GCGTCC 94442 ||||||||||||| | || |||||||||| ||| | ||||| || || ||| | Sbjct 7856 ACGGGTCCTGGCCTAGAATCACCACCTTGAGGTCGGAGAAGGCGCAGTCTCGCAGCGCC- 7914 Query 94443 AGGCGAACACGTCCTCGCGC-GCGGGCAG 94470 |||||||||||| || || ||||| || Sbjct 7915 --GCGAACACGTCCGCGGGCGGCGGGTAG 7941 >seq14095 Length=5420 Score = 102 bits (112), Expect = 7e-17 Identities = 260/388 (67%), Gaps = 12/388 (3%) Strand=Plus/Plus Query 94088 CCCCAGAGCATGAACACCAGCTTGGGGCGGGTCTCGCAGAGCCGCTGGACGACGGCGCGC 94147 |||||||||| |||||| | |||| || || || || || ||||||| Sbjct 1824 CCCCAGAGCAGGAACACGACGTTGGAAGCTTCCTTGCTGACCCTGGAGATGACGGCGTCT 1883 Query 94148 ACGAGCCGCGCCCAGCCGAGCGGGGCGTGGGAGCCGGGGACCCCGCGCCGCACGGTCAGC 94207 || | || |||||||| || ||| ||| || | || || ||||| || ||| Sbjct 1884 GTGAACTGCTCCCAGCCGCGCTTCTTGTGCGAGTTGGCCTCTCCTCGACGCACTGTAAGC 1943 Query 94208 GTCGTGTTCAGCAGCAGCACCCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGGGCGGGC 94267 ||||| ||||||||||| || | || |||| || ||||||||||| ||| Sbjct 1944 ACAGTGTTGAGCAGCAGCACGCCCTGTCGACTCCAGCAAGACAAGCAGCCGTGGGTGGGA 2003 Query 94268 GCGGGCAGCGTCGGGTACGTCGCCCG-GACCGCCGCGAAGATGTTGGCCAGGCTCGGGGG 94326 || ||| | | |||||| | | || || ||||||||| ||||| || || Sbjct 2004 -CGCGCAATGCCC---ACGTCGTTCATGGCCTCCTTGAAGATGTTCTTGAGGCTGGGCGG 2059 Query 94327 GATCGGCACCCCGCGCCGGACGCTGAAGGCCAGCCCGTGGGCCTGGCCCGGCCCGTGGTA 94386 ||| || ||| | || || |||| ||| ||||| ||||| |||||||||||| Sbjct 2060 CGGCGGGACTCCGTGGCGCACTGAGAAGCTCAGTCCGTGAGCCTGTTGCGGCCCGTGGTA 2119 Query 94387 CGGGTCCTGGCCGATGATGACCACCTTGACGTCCTCG--GGCGCCGTGAGGC-GCGTCCA 94443 |||||||||||| | || |||||||||| ||| | ||||| || || ||| | Sbjct 2120 CGGGTCCTGGCCTAGAATCACCACCTTGAGGTCGGAGAAGGCGCAGTCTCGCAGCGCC-- 2177 Query 94444 GGCGAACACGTCCTCGCGC-GCGGGCAG 94470 ||||||||||| || || ||||| || Sbjct 2178 -GCGAACACGTCTGCGGGCGGCGGGTAG 2204 >seq58340 Length=7784 Score = 96.9 bits (106), Expect = 3e-15 Identities = 261/390 (67%), Gaps = 16/390 (4%) Strand=Plus/Plus Query 94088 CCCCAGAGCATGAACACCAGCTTGGGGCGGGTCTCGCAGAGCCGCTGGAC--GACGGCGC 94145 ||||| |||| |||||| | |||| | || || || | ||||| ||||||| Sbjct 4184 CCCCAAAGCAAGAACACGACGTTGGAGGCTTCCTTGCTGA--CTCTGGAGATGACGGCGT 4241 Query 94146 GCACGAGCCGCGCCCAGCCGAGCGGGGCGTGGGAGCCGGGGACCCCGCGCCGCACGGTCA 94205 || | || |||||||| || ||| ||| || | || || || ||||| | Sbjct 4242 CTGTGAACTGCTCCCAGCCGCGCTTCTTGTGCGAGTTGGCCTCTCCTCGACGGACGGTAA 4301 Query 94206 GCGTCGTGTTCAGCAGCAGCACCCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGGGCGG 94265 || || || ||||||||||| || | || |||| || ||||||||| | || Sbjct 4302 GCACAGTATTGAGCAGCAGCACGCCCTGTCGACTCCAGCAAGACAAGCAGCCGTGCGTGG 4361 Query 94266 GCGCGGGCAGCGTCGGGTACGTCGCCCG-GACCGCCGCGAAGATGTTGGCCAGGCTCGGG 94324 | ||| ||| | | |||||| | | || || ||||||||| || || || Sbjct 4362 G-GCGCGCAATGCCC---ACGTCGTTCATGGCCTCCTTGAAGATGTTCTTGAGACTGGGC 4417 Query 94325 GGGATCGGCACCCCGCGCCGGACGCTGAAGGCCAGCCCGTGGGCCTGGCCCGGCCCGTGG 94384 || ||| || ||| | || || |||| ||| ||||| ||||| |||||||||| Sbjct 4418 GGCGGCGGGACTCCGTGGCGCACCGAGAAGCTCAGGCCGTGAGCCTGCTGCGGCCCGTGG 4477 Query 94385 TACGGGTCCTGGCCGATGATGACCACCTTGACGTCCTCG--GGCGCCGTGAGGC-GCGTC 94441 |||||||||||||| | || |||||||||| ||| | ||||| || || ||| | Sbjct 4478 TACGGGTCCTGGCCTAGAATCACCACCTTGAGGTCGGAGAAGGCGCAGTCTCGCAGCGCC 4537 Query 94442 CAGGCGAACACGTCCTCGCGC-GCGGGCAG 94470 |||||||||||| || || ||||| || Sbjct 4538 ---GCGAACACGTCCGCGGGCGGCGGGTAG 4564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458532242889120