Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq42237 145 1e-30 seq35662 145 1e-30 seq18176 145 1e-30 seq61507 136 6e-28 seq51009 136 6e-28 seq46681 134 2e-27 seq50787 127 3e-25 seq40526 127 3e-25 seq21551 127 3e-25 >seq42237 Length=4983 Score = 145 bits (160), Expect = 1e-30 Identities = 180/244 (74%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 3901 CGCCAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 3843 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || || ||||| || || |||||| |||| || | |||| || |||| Sbjct 3842 TCCGTCGTCTCGCACGCCGTGGCGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGA 3783 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | |||| | ||| | |||||| ||| |||||| | || | || ||| || | Sbjct 3782 CCCGCGGTGTTCTCAAGGTGTTCCTCGAGAACGTTATTCGCGACTCGGTCACCTACACTG 3723 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || ||||| || ||||||| |||| || || | || || || | Sbjct 3722 AGCACGCTCGCCGCAAAACTGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGCCAGG 3663 Query 16671 GCCG 16674 |||| Sbjct 3662 GCCG 3659 >seq35662 Length=2367 Score = 145 bits (160), Expect = 1e-30 Identities = 180/244 (74%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 1974 CGCCAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 1916 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || |||||||| || || |||||| |||| || | |||| || |||| Sbjct 1915 TCCGTCGTCTCGCACGTCGTGGCGGCGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGA 1856 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | ||| | ||| | |||||| ||| ||| |||| || | || ||| || | Sbjct 1855 CTCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCCGTCACCTACACGG 1796 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || || ||||| ||||||| |||| || || | || || || | Sbjct 1795 AGCACGCTCGCCGCAAAACCGTCACTGCCATGGACGTCGTGTACGCTCTCAAGCGCCAGG 1736 Query 16671 GCCG 16674 | || Sbjct 1735 GACG 1732 >seq18176 Length=4092 Score = 145 bits (160), Expect = 1e-30 Identities = 180/244 (74%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 1510 CGCCAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 1452 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || || |||||||| || |||||| |||| || | |||| || |||| Sbjct 1451 TCCGTCGTCTCGCACGACGTGGTGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGA 1392 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | |||||| ||| ||| |||| || | || ||| || | Sbjct 1391 CCCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACTG 1332 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || ||||| || ||||||| |||| || || | || || || | Sbjct 1331 AGCACGCTCGCCGCAAAACTGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGCCAGG 1272 Query 16671 GCCG 16674 |||| Sbjct 1271 GCCG 1268 >seq61507 Length=7555 Score = 136 bits (150), Expect = 6e-28 Identities = 178/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| |||| | || ||||| || |||||||| || || |||||||| || | Sbjct 7248 CGCTAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATTACCAAGCCCGCCA 7190 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || |||||||| || || |||||| |||| || | |||| || |||| Sbjct 7189 TCCGTCGTCTCGCACGTCGTGGCGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGA 7130 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | |||||| | | ||| |||| || | || ||| || | Sbjct 7129 CCCGCGGTGTCCTCAAGGTGTTCCTCGAAAACGTCATCCGCGACTCGGTCACCTACACGG 7070 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || || ||||| ||||||| |||| || || | || || || | Sbjct 7069 AGCACGCTCGCCGCAAAACCGTCACTGCCATGGACGTCGTGTACGCTCTCAAGCGCCAGG 7010 Query 16671 GCCG 16674 | || Sbjct 7009 GACG 7006 Score = 134 bits (148), Expect = 2e-27 Identities = 177/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || |||||||| || || |||||||| || | Sbjct 5314 CGCYAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATYACCAAGCCCGCCA 5256 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || |||||||| || || |||||| |||| || | |||| || |||| Sbjct 5255 TCCGTCGTCTCGCACGTCGTGGCGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGA 5196 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | |||||| | | ||| |||| || | || ||| || | Sbjct 5195 CCCGCGGTGTCCTCAAGGTGTTCCTCGAAAACGTCATCCGCGACTCGGTCACCTACACGG 5136 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || || ||||| ||||||| |||| || || | || || || | Sbjct 5135 AGCACGCTCGCCGCAAAACCGTCACTGCCATGGACGTCGTGTACGCTCTCAAGCGCCAGG 5076 Query 16671 GCCG 16674 | || Sbjct 5075 GACG 5072 >seq51009 Length=2551 Score = 136 bits (150), Expect = 6e-28 Identities = 178/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || |||||||| || |||||||| || || | Sbjct 1082 CGCCAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAACCCGCCA 1140 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || || |||||||| || |||||| |||| || | |||| || |||| Sbjct 1141 TCCGTCGTCTCGCACGCCGTGGTGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGA 1200 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | |||||| ||| ||| |||| || | || ||| || | Sbjct 1201 CCCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACTG 1260 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || || || || ||||||| |||| || || | || || || | Sbjct 1261 AGCACGCTCGCCGCAAAACCGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGCCAGG 1320 Query 16671 GCCG 16674 |||| Sbjct 1321 GCCG 1324 >seq46681 Length=2626 Score = 134 bits (148), Expect = 2e-27 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || |||||||| || || |||||||| || | Sbjct 2233 CGCYAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATYACCAAGCCCGCCA 2175 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || || ||||| || || |||||| |||| || | |||| || |||| Sbjct 2174 TCCGTCGTCTCGCACGWCGTGGYGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGA 2115 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | |||||| ||| ||| |||| || | || ||| || | Sbjct 2114 CCCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACGG 2055 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || || ||||| ||||||| |||| || || | || || || | Sbjct 2054 AGCACGCCCGCCGCAAAACGGTCACTGCCATGGACGTCGTGTACGCTCTCAAGCGCCAGG 1995 Query 16671 GCCG 16674 | || Sbjct 1994 GACG 1991 >seq50787 Length=5301 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 1470 CGCCAAGCGTCACCGCAAGGTC-CTTCGTGACAACATCCAGGGCATCACCAAGCCCGCCA 1412 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||||||||| || || ||||| |||| || | |||| || |||| Sbjct 1411 TCCGCCGTCTCGCTCGTCGTGGCGGTGTAAAGCGCATCTCCGGCCTCATCTACGAGGAGA 1352 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| ||| ||| |||| || | || || || | Sbjct 1351 CGCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACTCGGTCACGTACACGG 1292 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || ||||| || ||||||| |||| || || | || || || | Sbjct 1291 AGCACGCTCGTCGCAAAACTGTGACGGCCATGGACGTCGTGTACGCGCTCAAGCGCCAGG 1232 Query 16671 GCCG 16674 | || Sbjct 1231 GACG 1228 >seq40526 Length=3276 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 1808 CGCCAAGCGTCACCGCAAGGTC-CTTCGTGACAACATCCAGGGCATCACCAAGCCGGCCA 1866 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||||||||| || || ||||| |||| || | |||| || |||| Sbjct 1867 TCCGCCGTCTCGCTCGTCGTGGCGGTGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGA 1926 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| ||| ||| |||| || | || || || | Sbjct 1927 CGCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACTCGGTCACGTACACGG 1986 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || ||||| || ||||||| |||| || || | || || || | Sbjct 1987 AGCACGCTCGTCGCAAAACTGTGACGGCCATGGACGTCGTGTACGCGCTCAAGCGCCAGG 2046 Query 16671 GCCG 16674 | || Sbjct 2047 GACG 2050 >seq21551 Length=1323 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 566 CGCCAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 508 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||||||||| || || ||||| |||| || | |||| || |||| Sbjct 507 TCCGCCGTCTCGCTCGTCGTGGCGGTGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGA 448 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| ||| ||| |||| || | || || || | Sbjct 447 CGCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACTCGGTCACGTACACGG 388 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || ||||| || ||||||| |||| || || | || || || | Sbjct 387 AGCACGCTCGTCGCAAAACTGTGACGGCCATGGACGTCGTGTACGCGCTCAAGCGCCAGG 328 Query 16671 GCCG 16674 | || Sbjct 327 GACG 324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79009066346076