Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq71374 95.1 1e-14 seq63001 95.1 1e-14 seq48423 95.1 1e-14 seq44758 95.1 1e-14 seq44128 95.1 1e-14 seq44127 95.1 1e-14 seq36642 84.2 3e-11 >seq71374 Length=5482 Score = 95.1 bits (104), Expect = 1e-14 Identities = 176/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 15398 ATATTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCAC 15457 || || || ||||| |||| ||| || || || || || ||||| | |||||||| ||| Sbjct 3219 ATCTTCATCGGACCCACGTTCTACCAGCGCCTGAAGCATATGGTCGACGACAAGATCCAC 3278 Query 15458 GCGCGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAA 15517 |||| |||| || | ||||| | ||| |||||||||| ||||| | | Sbjct 3279 TCGCGCTCGCGTGGTCCCGTGACCATGCTGACGCGCCAGCCCATGGAGGGTCGTGCTCGC 3338 Query 15518 GGCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGT---GCACGGCGCC 15574 | |||||||| || | ||||||||||| || || |||||| ||||||| | Sbjct 3339 GAAGGTGGCCTGCGTATGGGAGAGATGGAGCGCGATTG---TCTGGTCTCGCACGGCTCG 3395 Query 15575 ACCCAATTCCTCAACGAGCGCATGTTTCTCAACAGTGACCCGTTCCAGATTGACGTGTGC 15634 || | ||||||| || ||| |||| |||| ||| ||| || | |||||||| Sbjct 3396 GCCAACTTCCTCATGGACCGCCTGTTCGCCAACTCGGACGCGTACCGTGTCCACGTGTGC 3455 Query 15635 AAAGACTGCGGCATGAT 15651 | | ||||||||| || Sbjct 3456 GATGTCTGCGGCATCAT 3472 >seq63001 Length=7025 Score = 95.1 bits (104), Expect = 1e-14 Identities = 176/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 15398 ATATTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCAC 15457 || || || ||||| |||| ||| || || || || || ||||| | |||||||| ||| Sbjct 6592 ATCTTCATCGGACCCACGTTCTACCAGCGCCTGAAGCATATGGTCGACGACAAGATCCAC 6651 Query 15458 GCGCGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAA 15517 |||| |||| || | ||||| | ||| |||||||||| ||||| | | Sbjct 6652 TCGCGCTCGCGTGGTCCCGTGACCATGCTGACGCGCCAGCCCATGGAGGGTCGTGCTCGC 6711 Query 15518 GGCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGT---GCACGGCGCC 15574 | |||||||| || | ||||||||||| || || |||||| ||||||| | Sbjct 6712 GAAGGTGGCCTGCGTATGGGAGAGATGGAGCGCGATTG---TCTGGTCTCGCACGGCTCG 6768 Query 15575 ACCCAATTCCTCAACGAGCGCATGTTTCTCAACAGTGACCCGTTCCAGATTGACGTGTGC 15634 || | ||||||| || ||| |||| |||| ||| ||| || | |||||||| Sbjct 6769 GCCAACTTCCTCATGGACCGCCTGTTCGCCAACTCGGACGCGTACCGTGTCCACGTGTGC 6828 Query 15635 AAAGACTGCGGCATGAT 15651 | | ||||||||| || Sbjct 6829 GATGTCTGCGGCATCAT 6845 >seq48423 Length=8861 Score = 95.1 bits (104), Expect = 1e-14 Identities = 176/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 15398 ATATTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCAC 15457 || || || ||||| |||| ||| || || || || || ||||| | |||||||| ||| Sbjct 8428 ATCTTCATCGGACCCACGTTCTACCAGCGCCTGAAGCATATGGTCGACGACAAGATCCAC 8487 Query 15458 GCGCGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAA 15517 |||| |||| || | ||||| | ||| |||||||||| ||||| | | Sbjct 8488 TCGCGCTCGCGTGGTCCCGTGACCATGCTGACGCGCCAGCCCATGGAGGGTCGTGCTCGC 8547 Query 15518 GGCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGT---GCACGGCGCC 15574 | |||||||| || | ||||||||||| || || |||||| ||||||| | Sbjct 8548 GAAGGTGGCCTGCGTATGGGAGAGATGGAGCGCGATTG---TCTGGTCTCGCACGGCTCG 8604 Query 15575 ACCCAATTCCTCAACGAGCGCATGTTTCTCAACAGTGACCCGTTCCAGATTGACGTGTGC 15634 || | ||||||| || ||| |||| |||| ||| ||| || | |||||||| Sbjct 8605 GCCAACTTCCTCATGGACCGCCTGTTCGCCAACTCGGACGCGTACCGTGTCCACGTGTGC 8664 Query 15635 AAAGACTGCGGCATGAT 15651 | | ||||||||| || Sbjct 8665 GATGTCTGCGGCATCAT 8681 >seq44758 Length=7433 Score = 95.1 bits (104), Expect = 1e-14 Identities = 176/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 15398 ATATTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCAC 15457 || || || ||||| |||| ||| || || || || || ||||| | |||||||| ||| Sbjct 7000 ATCTTCATCGGACCCACGTTCTACCAGCGCCTGAAGCATATGGTCGACGACAAGATCCAC 7059 Query 15458 GCGCGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAA 15517 |||| |||| || | ||||| | ||| |||||||||| ||||| | | Sbjct 7060 TCGCGCTCGCGTGGTCCCGTGACCATGCTGACGCGCCAGCCCATGGAGGGTCGTGCTCGC 7119 Query 15518 GGCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGT---GCACGGCGCC 15574 | |||||||| || | ||||||||||| || || |||||| ||||||| | Sbjct 7120 GAAGGTGGCCTGCGTATGGGAGAGATGGAGCGCGATTG---TCTGGTCTCGCACGGCTCG 7176 Query 15575 ACCCAATTCCTCAACGAGCGCATGTTTCTCAACAGTGACCCGTTCCAGATTGACGTGTGC 15634 || | ||||||| || ||| |||| |||| ||| ||| || | |||||||| Sbjct 7177 GCCAACTTCCTCATGGACCGCCTGTTCGCCAACTCGGACGCGTACCGTGTCCACGTGTGC 7236 Query 15635 AAAGACTGCGGCATGAT 15651 | | ||||||||| || Sbjct 7237 GATGTCTGCGGCATCAT 7253 >seq44128 Length=4656 Score = 95.1 bits (104), Expect = 1e-14 Identities = 176/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 15398 ATATTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCAC 15457 || || || ||||| |||| ||| || || || || || ||||| | |||||||| ||| Sbjct 3219 ATCTTCATCGGACCCACGTTCTACCAGCGCCTGAAGCATATGGTCGACGACAAGATCCAC 3278 Query 15458 GCGCGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAA 15517 |||| |||| || | ||||| | ||| |||||||||| ||||| | | Sbjct 3279 TCGCGCTCGCGTGGTCCCGTGACCATGCTGACGCGCCAGCCCATGGAGGGTCGTGCTCGC 3338 Query 15518 GGCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGT---GCACGGCGCC 15574 | |||||||| || | ||||||||||| || || |||||| ||||||| | Sbjct 3339 GAAGGTGGCCTGCGTATGGGAGAGATGGAGCGCGATTG---TCTGGTCTCGCACGGCTCG 3395 Query 15575 ACCCAATTCCTCAACGAGCGCATGTTTCTCAACAGTGACCCGTTCCAGATTGACGTGTGC 15634 || | ||||||| || ||| |||| |||| ||| ||| || | |||||||| Sbjct 3396 GCCAACTTCCTCATGGACCGCCTGTTCGCCAACTCGGACGCGTACCGTGTCCACGTGTGC 3455 Query 15635 AAAGACTGCGGCATGAT 15651 | | ||||||||| || Sbjct 3456 GATGTCTGCGGCATCAT 3472 >seq44127 Length=5557 Score = 95.1 bits (104), Expect = 1e-14 Identities = 176/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 15398 ATATTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCAC 15457 || || || ||||| |||| ||| || || || || || ||||| | |||||||| ||| Sbjct 3219 ATCTTCATCGGACCCACGTTCTACCAGCGCCTGAAGCATATGGTCGACGACAAGATCCAC 3278 Query 15458 GCGCGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAA 15517 |||| |||| || | ||||| | ||| |||||||||| ||||| | | Sbjct 3279 TCGCGCTCGCGTGGTCCCGTGACCATGCTGACGCGCCAGCCCATGGAGGGTCGTGCTCGC 3338 Query 15518 GGCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGT---GCACGGCGCC 15574 | |||||||| || | ||||||||||| || || |||||| ||||||| | Sbjct 3339 GAAGGTGGCCTGCGTATGGGAGAGATGGAGCGCGATTG---TCTGGTCTCGCACGGCTCG 3395 Query 15575 ACCCAATTCCTCAACGAGCGCATGTTTCTCAACAGTGACCCGTTCCAGATTGACGTGTGC 15634 || | ||||||| || ||| |||| |||| ||| ||| || | |||||||| Sbjct 3396 GCCAACTTCCTCATGGACCGCCTGTTCGCCAACTCGGACGCGTACCGTGTCCACGTGTGC 3455 Query 15635 AAAGACTGCGGCATGAT 15651 | | ||||||||| || Sbjct 3456 GATGTCTGCGGCATCAT 3472 >seq36642 Length=3786 Score = 84.2 bits (92), Expect = 3e-11 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 126178 TTGGTGTAAATGTAGCGGGGAGCTGCC-GAATCCTTGCCTCCCTCCAACCGCGTGCCAAA 126236 |||||| |||| || || | |||| | | ||||||||| ||| ||| ||||| ||||| Sbjct 1261 TTGGTGAAAATATAACGAGC-GCTGGCTGCATCCTTGCCGCCCATCAAACGCGTACCAAA 1319 Query 126237 CTGACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTT 126296 ||||||| ||| || | || | |||||| ||| ||||||||||| || | || Sbjct 1320 CTGACCGATTGGCGACAGGAGGTGGATGTTGTTGCTTCCGACAAAGTCCTGAGCCATGTT 1379 Query 126297 GACAAT--GGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACG 126354 ||| || | | ||| | | ||||||||||| | ||| ||| ||||| | ||| Sbjct 1380 GACGATACAGCCCTGCAAA--CTTTGCTCGCCGTGGTGGTATGCGGAGTGCTCTGACACA 1437 Query 126355 TAGCCGCTCAGCTGCGCAACCTT 126377 ||||| ||| || || ||||| Sbjct 1438 TAGCCAGCCAGTTGTGCCACCTT 1460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610839209923200